| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078196
Identifier: 170078196
GI number: 170078196
Start: 1668678
End: 1669082
Strand: Direct
Name: 170078196
Synonym: SYNPCC7002_A1587
Alternate gene names: NA
Gene position: 1668678-1669082 (Clockwise)
Preceding gene: 170078195
Following gene: 170078197
Centisome position: 55.47
GC content: 49.63
Gene sequence:
>405_bases ATGTTTAAAACTATTCTTTTTCCCGTTGATAAAAGTCGTGAAGCCCGTGAAGCGGCGGAGACAGTGATTCAGCTTGTGAA ATCTTTCCAAAGTCGTTTAGTCCTGCTCTCCGTGGTCGAACCGACAGAGCCAGAGGAACGCCAGGGGGTGATGAATTCCG AAGAAGCGGTGGCCAAGCTCCTCCAGGGAGCCCATGATCTCTTTGCCCAAGCGGGGATCGAAGCGGAGATTATTGAACGG GAAGGGATGCCATCTTTTACTATTTGTGATGTGGCCGATGAAATTGAAGCTGATCTAATTGTGATGGGCTGTCGGGGTAT GGGCTTAACCCAAGAAGGAGTCGCCGAAAGTGTCACGAGCAAAGTTACGAATCTTTCTCCTTGTCCGGTCTTGATTATCC CCTAG
Upstream 100 bases:
>100_bases AAGACCATTTTTCCGAGAAAATTGAACTAGAAGTTCCAAATCCAGAAAAATATCTCCATGCAGATTTTACCGGAGCCTGT GTCTAGGAGGTAGAGCTACC
Downstream 100 bases:
>100_bases GGATTTGCTCTGCCAGTTAAATATCCAGCTTGAGATCACTGCTCTTTTTTTCTACAGGGCGGAGGCGATCACCTTTTGCT GTTCAGCCTTTTCGCCCATG
Product: universal stress protein
Products: NA
Alternate protein names: USP Sll1654 [H]
Number of amino acids: Translated: 134; Mature: 134
Protein sequence:
>134_residues MFKTILFPVDKSREAREAAETVIQLVKSFQSRLVLLSVVEPTEPEERQGVMNSEEAVAKLLQGAHDLFAQAGIEAEIIER EGMPSFTICDVADEIEADLIVMGCRGMGLTQEGVAESVTSKVTNLSPCPVLIIP
Sequences:
>Translated_134_residues MFKTILFPVDKSREAREAAETVIQLVKSFQSRLVLLSVVEPTEPEERQGVMNSEEAVAKLLQGAHDLFAQAGIEAEIIER EGMPSFTICDVADEIEADLIVMGCRGMGLTQEGVAESVTSKVTNLSPCPVLIIP >Mature_134_residues MFKTILFPVDKSREAREAAETVIQLVKSFQSRLVLLSVVEPTEPEERQGVMNSEEAVAKLLQGAHDLFAQAGIEAEIIER EGMPSFTICDVADEIEADLIVMGCRGMGLTQEGVAESVTSKVTNLSPCPVLIIP
Specific function: Unknown
COG id: COG0589
COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the universal stress protein A family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014729 - InterPro: IPR006015 - InterPro: IPR006016 [H]
Pfam domain/function: PF00582 Usp [H]
EC number: NA
Molecular weight: Translated: 14560; Mature: 14560
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKTILFPVDKSREAREAAETVIQLVKSFQSRLVLLSVVEPTEPEERQGVMNSEEAVAKL CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHCCCCCCHHHHHHH LQGAHDLFAQAGIEAEIIEREGMPSFTICDVADEIEADLIVMGCRGMGLTQEGVAESVTS HHHHHHHHHHCCCCCEEHHCCCCCCEEEECCHHHHCCCEEEEECCCCCCCHHHHHHHHHH KVTNLSPCPVLIIP HHCCCCCCCEEEEC >Mature Secondary Structure MFKTILFPVDKSREAREAAETVIQLVKSFQSRLVLLSVVEPTEPEERQGVMNSEEAVAKL CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHCCCCCCHHHHHHH LQGAHDLFAQAGIEAEIIEREGMPSFTICDVADEIEADLIVMGCRGMGLTQEGVAESVTS HHHHHHHHHHCCCCCEEHHCCCCCCEEEECCHHHHCCCEEEEECCCCCCCHHHHHHHHHH KVTNLSPCPVLIIP HHCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]