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The map label for this gene is ycf3

Identifier: 170078175

GI number: 170078175

Start: 1650994

End: 1651515

Strand: Reverse

Name: ycf3

Synonym: SYNPCC7002_A1566

Alternate gene names: 170078175

Gene position: 1651515-1650994 (Counterclockwise)

Preceding gene: 170078178

Following gene: 170078174

Centisome position: 54.9

GC content: 48.66

Gene sequence:

>522_bases
ATGCCCAGAACACAGCGCAACGATAATTTCATCGACAAAAGCTTTACGGTGATGGCCGATATCATCCTCAAAATTCTGCC
CACCAATAACCGTTCCAAAGAAGCCTTTGCCTATTATCGCGATGGGATGTCGGCCCAAGCCGATGGGGAATATTCCGAAG
CCCTCGAAAACTACGAAGAAGCCCTAAGACTCGAAGATGACCCCAATGATCGTAGCTATATCCTCTACAATATGGGCCTG
ATCTACGCCAGCAACGGCGATCACCACAAAGCTTTAGAACTCTACCACGAAGCCATTGATCTCAATCCCCGGATGCCCCA
GGCTCTAAATAACATTGCTGTGGTCTATCACTACCAAGGCGAAAAAGCAAAGCAATCTGGCAATGAAGACGAATCAGAAG
CGCTCTTTGATAAGGCCGCAGAATATTGGAAGCAGGCGATCCGCATCGCGCCGAACAACTACATCGAAGCGCAAAACTGG
CTGAAAACCACCGGTCGCTCGGAAATGGACGTCTTTTTCTAA

Upstream 100 bases:

>100_bases
TCATCCTCTCCCCAGAAAAAATACACCGCCATCGCAATCCGCTAAAATCACAAACAAATCAAGGTAAAGTAAATAGAGCA
TCCCTCGCAACGTAACCATT

Downstream 100 bases:

>100_bases
ATTAGTTAGTGATCGAAACTTTAAAGTAAGCATTCACATTGAGAATTTAAACATGATTGATCTTGAACAGGTTCGCAAGG
TTGCCCATTTAGCACGTTTG

Product: photosystem I assembly protein Ycf3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MPRTQRNDNFIDKSFTVMADIILKILPTNNRSKEAFAYYRDGMSAQADGEYSEALENYEEALRLEDDPNDRSYILYNMGL
IYASNGDHHKALELYHEAIDLNPRMPQALNNIAVVYHYQGEKAKQSGNEDESEALFDKAAEYWKQAIRIAPNNYIEAQNW
LKTTGRSEMDVFF

Sequences:

>Translated_173_residues
MPRTQRNDNFIDKSFTVMADIILKILPTNNRSKEAFAYYRDGMSAQADGEYSEALENYEEALRLEDDPNDRSYILYNMGL
IYASNGDHHKALELYHEAIDLNPRMPQALNNIAVVYHYQGEKAKQSGNEDESEALFDKAAEYWKQAIRIAPNNYIEAQNW
LKTTGRSEMDVFF
>Mature_172_residues
PRTQRNDNFIDKSFTVMADIILKILPTNNRSKEAFAYYRDGMSAQADGEYSEALENYEEALRLEDDPNDRSYILYNMGLI
YASNGDHHKALELYHEAIDLNPRMPQALNNIAVVYHYQGEKAKQSGNEDESEALFDKAAEYWKQAIRIAPNNYIEAQNWL
KTTGRSEMDVFF

Specific function: Seems to be required for the assembly of the photosystem I complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCF3_SYNP2 (B1XNN2)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001734813.1
- ProteinModelPortal:   B1XNN2
- SMR:   B1XNN2
- GeneID:   6055294
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1566
- HOGENOM:   HBG285147
- OMA:   NWLKTTG
- ProtClustDB:   PRK02603
- GO:   GO:0005488
- GO:   GO:0015979
- HAMAP:   MF_00439
- InterPro:   IPR022818
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734
- Gene3D:   G3DSA:1.25.40.10
- SMART:   SM00028

Pfam domain/function: PF00515 TPR_1

EC number: NA

Molecular weight: Translated: 20031; Mature: 19900

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS50005 TPR; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRTQRNDNFIDKSFTVMADIILKILPTNNRSKEAFAYYRDGMSAQADGEYSEALENYEE
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHH
ALRLEDDPNDRSYILYNMGLIYASNGDHHKALELYHEAIDLNPRMPQALNNIAVVYHYQG
HHCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHCCEEEEEEECC
EKAKQSGNEDESEALFDKAAEYWKQAIRIAPNNYIEAQNWLKTTGRSEMDVFF
CHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PRTQRNDNFIDKSFTVMADIILKILPTNNRSKEAFAYYRDGMSAQADGEYSEALENYEE
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHH
ALRLEDDPNDRSYILYNMGLIYASNGDHHKALELYHEAIDLNPRMPQALNNIAVVYHYQG
HHCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHCCEEEEEEECC
EKAKQSGNEDESEALFDKAAEYWKQAIRIAPNNYIEAQNWLKTTGRSEMDVFF
CHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA