Click here to switch to the map view.

The map label for this gene is clpX

Identifier: 170078143

GI number: 170078143

Start: 1618200

End: 1619531

Strand: Reverse

Name: clpX

Synonym: SYNPCC7002_A1534

Alternate gene names: 170078143

Gene position: 1619531-1618200 (Counterclockwise)

Preceding gene: 170078144

Following gene: 170078142

Centisome position: 53.84

GC content: 51.65

Gene sequence:

>1332_bases
ATGTCTAAATACGACTCCCATCTCAAATGTTCCTTTTGTGGTAAGTCCCAAGAACAGGTTAGAAAGCTCATTGCTGGGCC
AGGGGTCTATATTTGTGACGAATGTGTCGAGCTGTGTAACGAAATCCTCGATGAGGAGCTGATGGAAAATGCAGCGGGCA
TGGGGATGGGGCGATCGCCTGAAAAAAATCCCCCCAAGGCTCCCCCCGAAAAAATCAACTTTGAAGACATTCCCAAACCC
AGGGAAATTAAGCATTACCTCGACGAACATGTCATCGGCCAGGACGAAGCAAAAAAAGTCCTTTCCGTGGCTGTCTACAA
CCATTACAAGCGCCTGAGTTTGATGGAAGACGACGACGCCGATCCCGTCGCCGATGGCATTGAACTCCACAAATCCAATA
TTCTTTTGATCGGGCCAACGGGATGCGGTAAAACCCTCCTCGCCCAGACCCTCGCGAAGATCCTTGATGTGCCCTTTGCC
GTTGCCGATGCCACGACCCTCACCGAGGCGGGCTATGTGGGCGAAGATGTCGAAAATATTTTGCTGCGTCTTCTACAGGT
GGCCGATCTCGATGTGGCCGAAGCCCAGCGGGGGATTATCTACATTGACGAAATCGATAAAATTGCCCGCAAAAGTGAAA
ACCCCTCCATTACCCGTGATGTGTCTGGGGAAGGGGTACAACAGGCCCTGTTGAAAATGCTGGAGGGTACCGTCGCCAAT
GTGCCGCCCCAGGGAGGCAGAAAGCACCCGTACCAGGACTGCATTCAAATTGATACTCGCAATATTTTATTTATTTGTGG
TGGAGCCTTTGTCGGTCTTGATAAGGTGATTGAGCGGCGGGTCGGCAAAAAAAGTATGGGCTTTGTGCGGCCCGGGGAAG
AGGGCAGTGCCAAGGAACAACGTACCGCTGAATTACTCCAGCATCTTTCTCCAGAGGATCTCGTTAAGTACGGGATGATT
CCAGAGTTTATCGGGCGGATTCCGGTGATTGCGTCCCTCAGTCCCCTCGATGAGGAAGCGCTAGTTGAAATTTTGACCCA
ACCGAAGAATGCCCTCGTCAAGCAATACAAAAAACTACTGAAGATGGACAGTGTGCAGTTAGAGTTTGAACCCACGGCCA
TCCGGGCGATCGCCCAGGAAGCTTACCGCCGCAAAACCGGAGCCAGGGCGCTCCGGGGCATTGTCGAAGAATTAATGCTC
GATGTGATGTACGAACTGCCTTCCCGTAAGGATGTCAACCGCTGCACGATTACACCGGAAATGGTCGAAAAACGCTCCAC
AGCTGAGTTGTTACTCCATCCGTCCTCCTTACCCAAACCAGAATCTGCTTAG

Upstream 100 bases:

>100_bases
CTGAAGAGGCTTGCCAGTATGGTTTGATCGACCAAGTGATCGCCCCGAACGCCGCTTAACCCCATCGCTCACGTTATCCA
GAGGCCCTACTCCAAAACCC

Downstream 100 bases:

>100_bases
GGCCAATGGCGATCGCCCAGGTGCGGGGAGTCCCCCACTATTACGAATGGATTTGTTGCGGGGGCCGCGATCTTCCCAAA
CCAGTGATGTTATTTGTCCA

Product: ATP-dependent protease ATP-binding subunit ClpX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MSKYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVELCNEILDEELMENAAGMGMGRSPEKNPPKAPPEKINFEDIPKP
REIKHYLDEHVIGQDEAKKVLSVAVYNHYKRLSLMEDDDADPVADGIELHKSNILLIGPTGCGKTLLAQTLAKILDVPFA
VADATTLTEAGYVGEDVENILLRLLQVADLDVAEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVAN
VPPQGGRKHPYQDCIQIDTRNILFICGGAFVGLDKVIERRVGKKSMGFVRPGEEGSAKEQRTAELLQHLSPEDLVKYGMI
PEFIGRIPVIASLSPLDEEALVEILTQPKNALVKQYKKLLKMDSVQLEFEPTAIRAIAQEAYRRKTGARALRGIVEELML
DVMYELPSRKDVNRCTITPEMVEKRSTAELLLHPSSLPKPESA

Sequences:

>Translated_443_residues
MSKYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVELCNEILDEELMENAAGMGMGRSPEKNPPKAPPEKINFEDIPKP
REIKHYLDEHVIGQDEAKKVLSVAVYNHYKRLSLMEDDDADPVADGIELHKSNILLIGPTGCGKTLLAQTLAKILDVPFA
VADATTLTEAGYVGEDVENILLRLLQVADLDVAEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVAN
VPPQGGRKHPYQDCIQIDTRNILFICGGAFVGLDKVIERRVGKKSMGFVRPGEEGSAKEQRTAELLQHLSPEDLVKYGMI
PEFIGRIPVIASLSPLDEEALVEILTQPKNALVKQYKKLLKMDSVQLEFEPTAIRAIAQEAYRRKTGARALRGIVEELML
DVMYELPSRKDVNRCTITPEMVEKRSTAELLLHPSSLPKPESA
>Mature_442_residues
SKYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVELCNEILDEELMENAAGMGMGRSPEKNPPKAPPEKINFEDIPKPR
EIKHYLDEHVIGQDEAKKVLSVAVYNHYKRLSLMEDDDADPVADGIELHKSNILLIGPTGCGKTLLAQTLAKILDVPFAV
ADATTLTEAGYVGEDVENILLRLLQVADLDVAEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANV
PPQGGRKHPYQDCIQIDTRNILFICGGAFVGLDKVIERRVGKKSMGFVRPGEEGSAKEQRTAELLQHLSPEDLVKYGMIP
EFIGRIPVIASLSPLDEEALVEILTQPKNALVKQYKKLLKMDSVQLEFEPTAIRAIAQEAYRRKTGARALRGIVEELMLD
VMYELPSRKDVNRCTITPEMVEKRSTAELLLHPSSLPKPESA

Specific function: ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP

COG id: COG1219

COG function: function code O; ATP-dependent protease Clp, ATPase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpX chaperone family

Homologues:

Organism=Homo sapiens, GI7242140, Length=327, Percent_Identity=49.2354740061162, Blast_Score=303, Evalue=2e-82,
Organism=Escherichia coli, GI1786642, Length=422, Percent_Identity=60.9004739336493, Blast_Score=499, Evalue=1e-142,
Organism=Escherichia coli, GI1790366, Length=109, Percent_Identity=44.0366972477064, Blast_Score=95, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI71982908, Length=305, Percent_Identity=45.9016393442623, Blast_Score=272, Evalue=2e-73,
Organism=Caenorhabditis elegans, GI71982905, Length=305, Percent_Identity=45.9016393442623, Blast_Score=270, Evalue=8e-73,
Organism=Caenorhabditis elegans, GI71988663, Length=413, Percent_Identity=38.0145278450363, Blast_Score=255, Evalue=3e-68,
Organism=Caenorhabditis elegans, GI71988660, Length=255, Percent_Identity=39.2156862745098, Blast_Score=167, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6319704, Length=414, Percent_Identity=40.5797101449275, Blast_Score=278, Evalue=1e-75,
Organism=Drosophila melanogaster, GI24648289, Length=318, Percent_Identity=48.4276729559748, Blast_Score=296, Evalue=2e-80,
Organism=Drosophila melanogaster, GI24648291, Length=318, Percent_Identity=48.4276729559748, Blast_Score=296, Evalue=2e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPX_SYNP2 (B1XN45)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001734781.1
- ProteinModelPortal:   B1XN45
- GeneID:   6055280
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1534
- HOGENOM:   HBG745965
- OMA:   CGKSQEQ
- ProtClustDB:   PRK05342
- HAMAP:   MF_00175
- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR019489
- InterPro:   IPR004487
- InterPro:   IPR010603
- PANTHER:   PTHR11262:SF4
- SMART:   SM00382
- TIGRFAMs:   TIGR00382

Pfam domain/function: PF07724 AAA_2; PF10431 ClpB_D2-small; PF06689 zf-C4_ClpX

EC number: NA

Molecular weight: Translated: 49079; Mature: 48948

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVELCNEILDEELMENAAGMGMGRSP
CCCCCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EKNPPKAPPEKINFEDIPKPREIKHYLDEHVIGQDEAKKVLSVAVYNHYKRLSLMEDDDA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
DPVADGIELHKSNILLIGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENI
CHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHCHHHHHHCCCCCHHHHHH
LLRLLQVADLDVAEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVAN
HHHHHHHHCCCHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHCC
VPPQGGRKHPYQDCIQIDTRNILFICGGAFVGLDKVIERRVGKKSMGFVRPGEEGSAKEQ
CCCCCCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCHHHCCCCCCCCCCCHHHH
RTAELLQHLSPEDLVKYGMIPEFIGRIPVIASLSPLDEEALVEILTQPKNALVKQYKKLL
HHHHHHHHCCHHHHHHHCCCHHHHCCCCCEECCCCCCHHHHHHHHHCCHHHHHHHHHHHH
KMDSVQLEFEPTAIRAIAQEAYRRKTGARALRGIVEELMLDVMYELPSRKDVNRCTITPE
HHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHH
MVEKRSTAELLLHPSSLPKPESA
HHHHHCCHHHEECCCCCCCCCCC
>Mature Secondary Structure 
SKYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVELCNEILDEELMENAAGMGMGRSP
CCCCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EKNPPKAPPEKINFEDIPKPREIKHYLDEHVIGQDEAKKVLSVAVYNHYKRLSLMEDDDA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
DPVADGIELHKSNILLIGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENI
CHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHCHHHHHHCCCCCHHHHHH
LLRLLQVADLDVAEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVAN
HHHHHHHHCCCHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHCC
VPPQGGRKHPYQDCIQIDTRNILFICGGAFVGLDKVIERRVGKKSMGFVRPGEEGSAKEQ
CCCCCCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCHHHCCCCCCCCCCCHHHH
RTAELLQHLSPEDLVKYGMIPEFIGRIPVIASLSPLDEEALVEILTQPKNALVKQYKKLL
HHHHHHHHCCHHHHHHHCCCHHHHCCCCCEECCCCCCHHHHHHHHHCCHHHHHHHHHHHH
KMDSVQLEFEPTAIRAIAQEAYRRKTGARALRGIVEELMLDVMYELPSRKDVNRCTITPE
HHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHH
MVEKRSTAELLLHPSSLPKPESA
HHHHHCCHHHEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA