| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078115
Identifier: 170078115
GI number: 170078115
Start: 1592082
End: 1592897
Strand: Direct
Name: 170078115
Synonym: SYNPCC7002_A1506
Alternate gene names: NA
Gene position: 1592082-1592897 (Clockwise)
Preceding gene: 170078114
Following gene: 170078116
Centisome position: 52.93
GC content: 36.27
Gene sequence:
>816_bases TTGTTTTTTATCAGCTCAAAATCAATAGTTTTTACAAACAAGTATGATACTCCAACTAAACTCAAAATGCTAGATAAATT TAGAGACATTATTAGCTATTCTACTGCTCGACCGATTTTCATTATTGGGACTGGACGATCAGGTACTCATTGGCTTGGCT ATTCTCTTGAAAATCATCCTGATATACGAGCGACTATTGAAGCAAAGCCAATGTTTAATTTATCTACAAGAATAGCTTTA GATCCAAATCTAGAGGAAAAGTTGATTGGACGACTGATCCGATCCTATAAATGGCAGATTCTTGCATCTTATCCTCGACG TTACTTAGATAAAACACATCCTAATATCTGGATAGCTGAGAAGTTAAAGCGAGCATTTCCAAATGCGGTTTTTATCGGCA TTGAACGCAGTCCATACGCAACTGTTTCCAGCATGATGAATCATAAAGGGGTTTCCGCATGGCATCAACGCTGGAAAAAT TTTCCGCTCCCAAATCGCTTTCTTGGAATTACGCCGGAACTAGCAAATATTTATGATGAAATCCCAATGGCAGCAAAATG TGCGCTACGGTGGAGCGCTCATCATGAACAGATGCAAAAACTTAAAGAGATCTTAGGAGAGAATATTTTGGTAATTCATT ATGAAAATTTTGTTGTAAATCCTCAAGAAGTAATACTTAAACTGGAAAGGTTTTTGAACTTAAGTCGCCCAATTCCAATG CCAAATATCAATGTAAAATCATTGGATAAGTGGAAAAAACAATTGTCAACTATGGAAATTGAACAAGTTGAAGCAGTTGT TGGATTATCACCTTAA
Upstream 100 bases:
>100_bases TTGTTTTAGATAAAGGAAAGGTTATTGAACAAGGAGATCATAAATCCCTATTGAAACTAGATGGTCTTTATGCATACTAC TGGCGTTTGCAGAGTAGTAA
Downstream 100 bases:
>100_bases AAGAATTAAAACATAGACAATATTGACCTCAAAAAAATCACTAAGGTTTTAATCTCATGAAAGATATTAGATACATAATT AAACGGACAAGCCATTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 271; Mature: 271
Protein sequence:
>271_residues MFFISSKSIVFTNKYDTPTKLKMLDKFRDIISYSTARPIFIIGTGRSGTHWLGYSLENHPDIRATIEAKPMFNLSTRIAL DPNLEEKLIGRLIRSYKWQILASYPRRYLDKTHPNIWIAEKLKRAFPNAVFIGIERSPYATVSSMMNHKGVSAWHQRWKN FPLPNRFLGITPELANIYDEIPMAAKCALRWSAHHEQMQKLKEILGENILVIHYENFVVNPQEVILKLERFLNLSRPIPM PNINVKSLDKWKKQLSTMEIEQVEAVVGLSP
Sequences:
>Translated_271_residues MFFISSKSIVFTNKYDTPTKLKMLDKFRDIISYSTARPIFIIGTGRSGTHWLGYSLENHPDIRATIEAKPMFNLSTRIAL DPNLEEKLIGRLIRSYKWQILASYPRRYLDKTHPNIWIAEKLKRAFPNAVFIGIERSPYATVSSMMNHKGVSAWHQRWKN FPLPNRFLGITPELANIYDEIPMAAKCALRWSAHHEQMQKLKEILGENILVIHYENFVVNPQEVILKLERFLNLSRPIPM PNINVKSLDKWKKQLSTMEIEQVEAVVGLSP >Mature_271_residues MFFISSKSIVFTNKYDTPTKLKMLDKFRDIISYSTARPIFIIGTGRSGTHWLGYSLENHPDIRATIEAKPMFNLSTRIAL DPNLEEKLIGRLIRSYKWQILASYPRRYLDKTHPNIWIAEKLKRAFPNAVFIGIERSPYATVSSMMNHKGVSAWHQRWKN FPLPNRFLGITPELANIYDEIPMAAKCALRWSAHHEQMQKLKEILGENILVIHYENFVVNPQEVILKLERFLNLSRPIPM PNINVKSLDKWKKQLSTMEIEQVEAVVGLSP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31477; Mature: 31477
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFISSKSIVFTNKYDTPTKLKMLDKFRDIISYSTARPIFIIGTGRSGTHWLGYSLENHP CEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCC DIRATIEAKPMFNLSTRIALDPNLEEKLIGRLIRSYKWQILASYPRRYLDKTHPNIWIAE CEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHH KLKRAFPNAVFIGIERSPYATVSSMMNHKGVSAWHQRWKNFPLPNRFLGITPELANIYDE HHHHHCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCEECCCHHHHHHHHH IPMAAKCALRWSAHHEQMQKLKEILGENILVIHYENFVVNPQEVILKLERFLNLSRPIPM CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEECHHHHHHHHHHHHCCCCCCCC PNINVKSLDKWKKQLSTMEIEQVEAVVGLSP CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MFFISSKSIVFTNKYDTPTKLKMLDKFRDIISYSTARPIFIIGTGRSGTHWLGYSLENHP CEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCC DIRATIEAKPMFNLSTRIALDPNLEEKLIGRLIRSYKWQILASYPRRYLDKTHPNIWIAE CEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHH KLKRAFPNAVFIGIERSPYATVSSMMNHKGVSAWHQRWKNFPLPNRFLGITPELANIYDE HHHHHCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCEECCCHHHHHHHHH IPMAAKCALRWSAHHEQMQKLKEILGENILVIHYENFVVNPQEVILKLERFLNLSRPIPM CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEECHHHHHHHHHHHHCCCCCCCC PNINVKSLDKWKKQLSTMEIEQVEAVVGLSP CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA