| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078065
Identifier: 170078065
GI number: 170078065
Start: 1529398
End: 1530141
Strand: Reverse
Name: 170078065
Synonym: SYNPCC7002_A1456
Alternate gene names: NA
Gene position: 1530141-1529398 (Counterclockwise)
Preceding gene: 170078067
Following gene: 170078053
Centisome position: 50.87
GC content: 49.6
Gene sequence:
>744_bases ATGGCGTCCATTTCAGTCATAACCCAGGATGGCAATTTAACCAACGATCTTCGCGTACACCTCGCCCAGGCGGGAGATCT TGCCAAAGCCAGTGAAATTCCGCTCCAGCTCTGTTTTCAGCGGCAAGGTATCGGTTTTCGTTCGGCGATCGCCTTAAAAT TGGCCGCCCACAGCCACCAGCCTCCCCAGACCATTGCCCAGGCATATCTCGCTCAGCTCACTACTCCAACGCCGCAATCA AATTTAAAACACCGAACTGCAACGGCGGTATTCACCTATGAGGCGATCGCCACCCCCCAGGGTTGGTTAGAATTTTTTTT GATGCCGACGGAGATCGGCCGCTGGCTAGATCAAATATTACAGCGAGAAAATCTGATTTTCCCTCAGTTGCCCCCAGATC TTTTATTCTCTTGCCATTACCTACAGCAACGATTTTATGACCTCAGTCACCTCGCCACTGACTACACTGCTGATACGCCC CAATGGAATTTTGAAAAAACTCTTTTGCCCGCCTGGGAGCAAGCTCTCCTAGAGGCGATCGCCCGTTGTGTCCTAGGGAG TTTCCATCGCTCACCCAAACCTCACTTTTTTGCCACCCTCGAACAAACTCTCTGGGAATTACAGCGCCGTTGCCCTCTAT TTTATTTTCTCCGTGAAAATCCCACCCAAGGCCATCATTATTGGCAGTGGTTTACCTATCTCGCCCAATTTTTAGCCCAT TATCTCCCACAATTAGAAAATTAA
Upstream 100 bases:
>100_bases GTGAGCTGATCTTGGGTCGGTTTTAGGGGCCATTAATACGGGCAAAAGCTGCGGAAAGCTCTATCATCCTAAAAGATCCC CCTAGTCCAGGCAAGCTGCA
Downstream 100 bases:
>100_bases TTCACAAGACTCAAAGGCAGTGTGACGTTAGCTTTCACGCTTTTTTTGATTGGTCTATTTAAAATTTTCGACACAAAACT TGAAAAAAACATGGCAGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MASISVITQDGNLTNDLRVHLAQAGDLAKASEIPLQLCFQRQGIGFRSAIALKLAAHSHQPPQTIAQAYLAQLTTPTPQS NLKHRTATAVFTYEAIATPQGWLEFFLMPTEIGRWLDQILQRENLIFPQLPPDLLFSCHYLQQRFYDLSHLATDYTADTP QWNFEKTLLPAWEQALLEAIARCVLGSFHRSPKPHFFATLEQTLWELQRRCPLFYFLRENPTQGHHYWQWFTYLAQFLAH YLPQLEN
Sequences:
>Translated_247_residues MASISVITQDGNLTNDLRVHLAQAGDLAKASEIPLQLCFQRQGIGFRSAIALKLAAHSHQPPQTIAQAYLAQLTTPTPQS NLKHRTATAVFTYEAIATPQGWLEFFLMPTEIGRWLDQILQRENLIFPQLPPDLLFSCHYLQQRFYDLSHLATDYTADTP QWNFEKTLLPAWEQALLEAIARCVLGSFHRSPKPHFFATLEQTLWELQRRCPLFYFLRENPTQGHHYWQWFTYLAQFLAH YLPQLEN >Mature_246_residues ASISVITQDGNLTNDLRVHLAQAGDLAKASEIPLQLCFQRQGIGFRSAIALKLAAHSHQPPQTIAQAYLAQLTTPTPQSN LKHRTATAVFTYEAIATPQGWLEFFLMPTEIGRWLDQILQRENLIFPQLPPDLLFSCHYLQQRFYDLSHLATDYTADTPQ WNFEKTLLPAWEQALLEAIARCVLGSFHRSPKPHFFATLEQTLWELQRRCPLFYFLRENPTQGHHYWQWFTYLAQFLAHY LPQLEN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28579; Mature: 28448
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASISVITQDGNLTNDLRVHLAQAGDLAKASEIPLQLCFQRQGIGFRSAIALKLAAHSHQ CCCEEEEECCCCCCHHHHHHHHHCCCCCHHHHCHHHHHHHHCCCCHHHHHHHHHHHCCCC PPQTIAQAYLAQLTTPTPQSNLKHRTATAVFTYEAIATPQGWLEFFLMPTEIGRWLDQIL CHHHHHHHHHHHHCCCCCCHHCCHHHHHHEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHH QRENLIFPQLPPDLLFSCHYLQQRFYDLSHLATDYTADTPQWNFEKTLLPAWEQALLEAI HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH ARCVLGSFHRSPKPHFFATLEQTLWELQRRCPLFYFLRENPTQGHHYWQWFTYLAQFLAH HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH YLPQLEN HHHCCCC >Mature Secondary Structure ASISVITQDGNLTNDLRVHLAQAGDLAKASEIPLQLCFQRQGIGFRSAIALKLAAHSHQ CCEEEEECCCCCCHHHHHHHHHCCCCCHHHHCHHHHHHHHCCCCHHHHHHHHHHHCCCC PPQTIAQAYLAQLTTPTPQSNLKHRTATAVFTYEAIATPQGWLEFFLMPTEIGRWLDQIL CHHHHHHHHHHHHCCCCCCHHCCHHHHHHEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHH QRENLIFPQLPPDLLFSCHYLQQRFYDLSHLATDYTADTPQWNFEKTLLPAWEQALLEAI HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH ARCVLGSFHRSPKPHFFATLEQTLWELQRRCPLFYFLRENPTQGHHYWQWFTYLAQFLAH HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH YLPQLEN HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA