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The map label for this gene is smpB [H]

Identifier: 170077965

GI number: 170077965

Start: 1408312

End: 1408779

Strand: Direct

Name: smpB [H]

Synonym: SYNPCC7002_A1351

Alternate gene names: 170077965

Gene position: 1408312-1408779 (Clockwise)

Preceding gene: 170077964

Following gene: 170077966

Centisome position: 46.82

GC content: 48.08

Gene sequence:

>468_bases
ATGGCAGACACCAAAAAACCGATCAAAATCATTAGTGATAATCGTAAAGCCCGTTTCCAGTATGAAATCCTTGAAACCTT
AGAGGCCGGGATTCAGCTCCAGGGAACGGAGGTTAAATCGGTGCGGGCGGGCAAGGTGAACCTAGGGGACGGTTATGTGT
TAATTCGCAACAACGAGGCTTGGCTGCTCAATGTGCATATTTCGCCATATACTGCCAGTGGCCAGTACTTTAACCATGAA
CCCAAGCGCGATCGCAAATTGCTGTTGCACCGTAAAGAAATTCGCCGCTTGATCGGTCAACTAGAACAAAAGGGATTGAC
GCTGATTCCTTTAAAAATGTATCTCAAGGGCAGCTTAGTGAAAGTCAGTCTGGGGCTTGGCCGTGGGAAAAAGCTCCACG
ATAAACGCGAAACGATTAAACGTCGCCAGGATAGCCGGGAAATGGCGCGGGCCTTGAAACGTTATTAA

Upstream 100 bases:

>100_bases
CGGTTCATTAAGCGCCTGGTGGGAAAGGGATCAGGGGTTTCGGGGAATTTGTTAGGATTAGAGATTACATATTTCTTGTT
CCGCAGTTGTTCAAAACCCT

Downstream 100 bases:

>100_bases
GCCAAATTGAACCATGGAAAGTTTTCCCAAAGAAAACTCCATGTCGCATCAAATGGGAAAGTGAATTGTCGGGCGATCGC
CCTGGGAAATACCAATATTT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MADTKKPIKIISDNRKARFQYEILETLEAGIQLQGTEVKSVRAGKVNLGDGYVLIRNNEAWLLNVHISPYTASGQYFNHE
PKRDRKLLLHRKEIRRLIGQLEQKGLTLIPLKMYLKGSLVKVSLGLGRGKKLHDKRETIKRRQDSREMARALKRY

Sequences:

>Translated_155_residues
MADTKKPIKIISDNRKARFQYEILETLEAGIQLQGTEVKSVRAGKVNLGDGYVLIRNNEAWLLNVHISPYTASGQYFNHE
PKRDRKLLLHRKEIRRLIGQLEQKGLTLIPLKMYLKGSLVKVSLGLGRGKKLHDKRETIKRRQDSREMARALKRY
>Mature_154_residues
ADTKKPIKIISDNRKARFQYEILETLEAGIQLQGTEVKSVRAGKVNLGDGYVLIRNNEAWLLNVHISPYTASGQYFNHEP
KRDRKLLLHRKEIRRLIGQLEQKGLTLIPLKMYLKGSLVKVSLGLGRGKKLHDKRETIKRRQDSREMARALKRY

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=143, Percent_Identity=44.0559440559441, Blast_Score=130, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- InterPro:   IPR020081
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 17962; Mature: 17831

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTKKPIKIISDNRKARFQYEILETLEAGIQLQGTEVKSVRAGKVNLGDGYVLIRNNEA
CCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEECCCEECEEECCEEECCCCEEEEECCCE
WLLNVHISPYTASGQYFNHEPKRDRKLLLHRKEIRRLIGQLEQKGLTLIPLKMYLKGSLV
EEEEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCEE
KVSLGLGRGKKLHDKRETIKRRQDSREMARALKRY
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ADTKKPIKIISDNRKARFQYEILETLEAGIQLQGTEVKSVRAGKVNLGDGYVLIRNNEA
CCCCCCEEEECCCCCHHHHHHHHHHHHCCCEECCCEECEEECCEEECCCCEEEEECCCE
WLLNVHISPYTASGQYFNHEPKRDRKLLLHRKEIRRLIGQLEQKGLTLIPLKMYLKGSLV
EEEEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCEE
KVSLGLGRGKKLHDKRETIKRRQDSREMARALKRY
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA