| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077911
Identifier: 170077911
GI number: 170077911
Start: 1347355
End: 1348233
Strand: Reverse
Name: 170077911
Synonym: SYNPCC7002_A1296
Alternate gene names: NA
Gene position: 1348233-1347355 (Counterclockwise)
Preceding gene: 170077914
Following gene: 170077910
Centisome position: 44.82
GC content: 50.74
Gene sequence:
>879_bases ATGTCCCAATCGCGGCATCAGACGGCAGAACCATCGACCCCAACATCACCTGCCCTAATTGCCCAAGTCCCCACGCCCAC TAGCCTCTCTCCAGAAGGACTGCGCTACTTTCAAAACATGGGCCCCCTTGAATATGCAGCTCGCCTGAGCGGTGTCCCAG ATTTACCAGCCTGGCGCGTCCGACTTCGCCTATCACCACCGACCCTGATCGACAATGCTCGAGAACAACTGAACACGGTA ACTGTCGATCACTATAATCTGTCCCCATCTCTCTATCAGGATCTCGCAGAGAGCTATGGGGTAGAAAATGCTGACCCTAG TTTCAATGATCGATCACCCCACCAGGCTTGGTCTTTTACTTTTATGCCGATCATGGGGATTGCTGCTGAATTACGGCCAG AATATACCGAGAGTCAGACTTTTCCTTTCGAGAGCAAAACAAAGGAATCTTGTGATTTTGTCGGGAATTGTACTGATTTG ACTTTTTTAGATTTTGGTGGTGACGAATGGCGGGCTGCACCGACCCTTGCCCCAGAACAAGCCCCTTGGGAAAGTGAATC CCAAAGTATCTATGTTTTAGTGCGAGCGTTAGCACAACAGGCTGGCTGGTATGACCCAGTTCTAGGTTGGTTGCCTCCGA CAGAAGTTCCTGAAGGAACCTCCGATGCAAGGCCCTGGGTAGAGATTTTGATTGATAACTACCCAGGCAATGGCGGTGGT TACCAAGGGGTCTGGTTGGAACGAGTTGCCGATGACAGCGTACAACAGATTGTCCATGGGGTATTTTATGAACCGACTAA CCCACAGATTTTTACCTTTGAGAGCTATCGTTGCCGCCGCACTTCACCCCCGGGAAGTTTGAGCCTCCTTTGTCCCTAA
Upstream 100 bases:
>100_bases GGCGATCGCCTTGATCACGGCCTGTGGTCAATCTGCAGATTCCGCCAAACTGCTCCAAGCAAATCCTATCGCTTCAGAAA CCCAAAACACCGGGGGGGTA
Downstream 100 bases:
>100_bases AGGATAAAAAGGCAAGAAGCGCTTGGATGGGCCATTTGTCACCGCTAGAATTGAACTTTTTCGGGTAAATTTTCCGCAAA AGTAAAAGCAATTGGCCTGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MSQSRHQTAEPSTPTSPALIAQVPTPTSLSPEGLRYFQNMGPLEYAARLSGVPDLPAWRVRLRLSPPTLIDNAREQLNTV TVDHYNLSPSLYQDLAESYGVENADPSFNDRSPHQAWSFTFMPIMGIAAELRPEYTESQTFPFESKTKESCDFVGNCTDL TFLDFGGDEWRAAPTLAPEQAPWESESQSIYVLVRALAQQAGWYDPVLGWLPPTEVPEGTSDARPWVEILIDNYPGNGGG YQGVWLERVADDSVQQIVHGVFYEPTNPQIFTFESYRCRRTSPPGSLSLLCP
Sequences:
>Translated_292_residues MSQSRHQTAEPSTPTSPALIAQVPTPTSLSPEGLRYFQNMGPLEYAARLSGVPDLPAWRVRLRLSPPTLIDNAREQLNTV TVDHYNLSPSLYQDLAESYGVENADPSFNDRSPHQAWSFTFMPIMGIAAELRPEYTESQTFPFESKTKESCDFVGNCTDL TFLDFGGDEWRAAPTLAPEQAPWESESQSIYVLVRALAQQAGWYDPVLGWLPPTEVPEGTSDARPWVEILIDNYPGNGGG YQGVWLERVADDSVQQIVHGVFYEPTNPQIFTFESYRCRRTSPPGSLSLLCP >Mature_291_residues SQSRHQTAEPSTPTSPALIAQVPTPTSLSPEGLRYFQNMGPLEYAARLSGVPDLPAWRVRLRLSPPTLIDNAREQLNTVT VDHYNLSPSLYQDLAESYGVENADPSFNDRSPHQAWSFTFMPIMGIAAELRPEYTESQTFPFESKTKESCDFVGNCTDLT FLDFGGDEWRAAPTLAPEQAPWESESQSIYVLVRALAQQAGWYDPVLGWLPPTEVPEGTSDARPWVEILIDNYPGNGGGY QGVWLERVADDSVQQIVHGVFYEPTNPQIFTFESYRCRRTSPPGSLSLLCP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32564; Mature: 32433
Theoretical pI: Translated: 4.22; Mature: 4.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQSRHQTAEPSTPTSPALIAQVPTPTSLSPEGLRYFQNMGPLEYAARLSGVPDLPAWRV CCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCEEE RLRLSPPTLIDNAREQLNTVTVDHYNLSPSLYQDLAESYGVENADPSFNDRSPHQAWSFT EEEECCCHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE FMPIMGIAAELRPEYTESQTFPFESKTKESCDFVGNCTDLTFLDFGGDEWRAAPTLAPEQ HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCC APWESESQSIYVLVRALAQQAGWYDPVLGWLPPTEVPEGTSDARPWVEILIDNYPGNGGG CCCCCCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC YQGVWLERVADDSVQQIVHGVFYEPTNPQIFTFESYRCRRTSPPGSLSLLCP CCCHHHHHHHHHHHHHHHHHHEECCCCCCEEEECCCEEECCCCCCCEEEECC >Mature Secondary Structure SQSRHQTAEPSTPTSPALIAQVPTPTSLSPEGLRYFQNMGPLEYAARLSGVPDLPAWRV CCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCEEE RLRLSPPTLIDNAREQLNTVTVDHYNLSPSLYQDLAESYGVENADPSFNDRSPHQAWSFT EEEECCCHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE FMPIMGIAAELRPEYTESQTFPFESKTKESCDFVGNCTDLTFLDFGGDEWRAAPTLAPEQ HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCC APWESESQSIYVLVRALAQQAGWYDPVLGWLPPTEVPEGTSDARPWVEILIDNYPGNGGG CCCCCCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC YQGVWLERVADDSVQQIVHGVFYEPTNPQIFTFESYRCRRTSPPGSLSLLCP CCCHHHHHHHHHHHHHHHHHHEECCCCCCEEEECCCEEECCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA