| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077859
Identifier: 170077859
GI number: 170077859
Start: 1283469
End: 1283942
Strand: Reverse
Name: 170077859
Synonym: SYNPCC7002_A1243
Alternate gene names: NA
Gene position: 1283942-1283469 (Counterclockwise)
Preceding gene: 170077860
Following gene: 170077855
Centisome position: 42.68
GC content: 53.16
Gene sequence:
>474_bases ATGAATATTAAGTCTCTCCTCACCACCATCACTTGCTTGTCAGTCGGCTGTCTCGCCCCCAAAGCAGCCCTGGCCCACGC CATTGAAACGAATTTCCAAGTGCGCTTCGATAACTTTGAGCTCCAAAGCACCTTTGGTGATGGCGAAGTTTTCCCCAATG CCCCCGTTACGGTTTACTCTCCAGAAAATCCTGACCAACCGATCATGATTGGTCGCACCGATGAAAACGGGAAATTTAGC TTCAAAGCCGACACTACCAAAGCCGGAGACTGGGCCGTAGAAATTGGTTCCGCCGACGATAGCCACTGGGATCGCCTGAT TGTGCCCGTCCAAGCAGAGGGGATCGACGCCAACGCCATTAGCGAACTGCCCCAACCGGAACACAGCCATGATTACTTTG CCTATTCATTCCTAGCGGGAATCGTCGGCTTGGGCCTCGTCTTTGGGATGCGCCAAAACCAAGACCGCGCTTAA
Upstream 100 bases:
>100_bases ATTGAAGCCAATTTTAAGGCCCTGGCCCGTTCGTGCTGGTGCCTCAGATTTTTCTAAATACCCTAGGTTTCAGGTTACGC CCTGTTTCAGTAAAGTACCT
Downstream 100 bases:
>100_bases ACACAAATTATTTTTTACAAATTAAGGCTCACTGCCCCTTGACGGAGAATGCGCCAGCCGGAGCCTGTCCACTGGGCCAC CGTCGAGGGCTGTCCACTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 157; Mature: 157
Protein sequence:
>157_residues MNIKSLLTTITCLSVGCLAPKAALAHAIETNFQVRFDNFELQSTFGDGEVFPNAPVTVYSPENPDQPIMIGRTDENGKFS FKADTTKAGDWAVEIGSADDSHWDRLIVPVQAEGIDANAISELPQPEHSHDYFAYSFLAGIVGLGLVFGMRQNQDRA
Sequences:
>Translated_157_residues MNIKSLLTTITCLSVGCLAPKAALAHAIETNFQVRFDNFELQSTFGDGEVFPNAPVTVYSPENPDQPIMIGRTDENGKFS FKADTTKAGDWAVEIGSADDSHWDRLIVPVQAEGIDANAISELPQPEHSHDYFAYSFLAGIVGLGLVFGMRQNQDRA >Mature_157_residues MNIKSLLTTITCLSVGCLAPKAALAHAIETNFQVRFDNFELQSTFGDGEVFPNAPVTVYSPENPDQPIMIGRTDENGKFS FKADTTKAGDWAVEIGSADDSHWDRLIVPVQAEGIDANAISELPQPEHSHDYFAYSFLAGIVGLGLVFGMRQNQDRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17119; Mature: 17119
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIKSLLTTITCLSVGCLAPKAALAHAIETNFQVRFDNFELQSTFGDGEVFPNAPVTVYS CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCEEEEEECCCCCCCCCCCEEEEC PENPDQPIMIGRTDENGKFSFKADTTKAGDWAVEIGSADDSHWDRLIVPVQAEGIDANAI CCCCCCCEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHH SELPQPEHSHDYFAYSFLAGIVGLGLVFGMRQNQDRA HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MNIKSLLTTITCLSVGCLAPKAALAHAIETNFQVRFDNFELQSTFGDGEVFPNAPVTVYS CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCEEEEEECCCCCCCCCCCEEEEC PENPDQPIMIGRTDENGKFSFKADTTKAGDWAVEIGSADDSHWDRLIVPVQAEGIDANAI CCCCCCCEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHH SELPQPEHSHDYFAYSFLAGIVGLGLVFGMRQNQDRA HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA