| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077654
Identifier: 170077654
GI number: 170077654
Start: 1070298
End: 1072124
Strand: Reverse
Name: 170077654
Synonym: SYNPCC7002_A1034
Alternate gene names: NA
Gene position: 1072124-1070298 (Counterclockwise)
Preceding gene: 170077656
Following gene: 170077653
Centisome position: 35.64
GC content: 48.0
Gene sequence:
>1827_bases ATGTCTAAAACAGTGAGAACTTTTCTCAGTGGCGCTTCCGTTGCCCTAGGTGCAACCGTAGCTTTTTCTGGCACTGCCCA AGCCAACACTGAACTTCTCGATCAAATCAACAGCTATAGCCAAGACGACATCGCTCAGGTTAATAGCGTTTTCCAACTCA GCGATGTTTCTCCTTCTGACTGGGCCTTTGACGCACTGCGCAACCTAGTCGAAAACTACAACTGTATCGTTGGTTATCCC GATGGCACTTTCCGTGGTAGCCGTCCCCTCAGCCGTTATGAATTTGCTGCTGGTCTAAACGCTTGTTTACAGCAGATCGA GCGGATGATTCAAAGTGGTACTTCTGAAGTAACCCCCGAAGATCTCGCTGCACTCCGTCGTCTCGTGAACGAATTCGAAG CAGAACTCGCCACCCTCGGTGCTCGCGTTGATGACCTCGAAGGCCGCGTTGAATTCCTCGAAGACAACCAATTCTCCACT ACCACCAAACTCGGTGGAGAAGTAATCTTCAACCTCGGCGGTGCTTTTGGTGAAGAGAAAGCTTCGCCTCTAGCACTTGA TTCTATTGAATTTCCTGGTGGAGACTTCGATCCTGAGACTGTTACCTTTGAAGAGTTATTTGACGTAGTTGATTACCAAG ATATTTCTTCTGAAGAGAGAGAGCTTCTCAAAGAATTTTTCGTAGGTCTTGGCATCGATGAAGACGCTCTAGGGTTTTCT TTTGGTCTTGGAGACGACGGAGACTTACAAGATTTCTTTACTGGACTTGCCGATAATGATGACATCGACGATGAAATCAC CTTCAGCAACCGCGTTCGTCTAAACCTTGACACTAGCTTTACTGGCAAAGACCGCCTGCGGACTCGTCTAGAAGCTGGTA ACATCACTGCCTTTGATGATGCCACCGGTGTAGATTCTGCTCGCCTTGGCTTTGACACCGATAATGGTAATGACGTCGAG ATCGGCAAATTATTCTACCGATTCCCCGTTGGTGATAACGTCACAGCTTATGTTGGTGCCGTAGGCATGGGAATTGACGA TATTTTCGATGCCACCAGTCCTTATTTTGAAAGCAGCGGTAGTGGCGCTCTGTCTCGCTTTGGTCGCTTTAACCCCATCT ACCGTGGCCCCGATGGCGCTGGTGCTGGTTTCAACTTTGACCTCGGCGAGAGATTTACTTTCTCCGCAGCTTACCTGGCA GACGATGGCGATGTGAACAATCCCGAAGAAAAGAATGGTCTTTTTAACGGTAACTACACCGCAGGCGCTCAGCTCGATTT CAAACCGGCTGATGACATTATGTTCTCTGCCTTCTATGCCAACCGCTACCAAAAAGCGGGCGATGTTAACTTGAGTGGTA GCACTGGCAGCGTCATTGCTAACGACCCCACCTTTAACTCCCTGGCTGTTTCTTCTAACAACTTTGGTTTACAAGGTAGC TGGCTAATTGGTGACAAATTCAACCTTGGCGGTTGGGTTGGTTACACTACCGCAGACATCGAAGATCCCAATGTCACTGG TAACTTTGATGTTTGGAACTGGGCTGTCAACGCAGCTTTACTTGATGTCGGTGGCGAAGGTAATGTCCTTGGTCTGATCT TCGGTCAAACACCTAAGCTGACTAGCGGTAACATCGACTTCGGTCAAATTGAAGTGAACTACAACGATGACAGCGACAGC AGCTATCTCGCTGAACTTCAGTATCGCTACAAGCTCAACGACAACATCACCATTACTCCCGGTGCTTATGTCGTATTCAA CCCCAACCAAAATGACGATAATGACACTGTTGTTGTGGGTTCTGTACGTACTACCTTTAGCTTCTAA
Upstream 100 bases:
>100_bases CGTTTTGAAAATGATTTGCAGTAATAAAACATGCTTATCAATAACATAAATGCCCAAGCTCAAAGTCAAAAAATATCTCA GGTGTGAGGTTCAATCGAAT
Downstream 100 bases:
>100_bases GGCTGAAAAAAAACAAGTCTAATTCCTCACACATATTGCTTCTAAAAGCGAAAAATTAGTCCTGAAAGTGAGTCAATTTT GGCTCACTTTTTCTTTGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 608; Mature: 607
Protein sequence:
>608_residues MSKTVRTFLSGASVALGATVAFSGTAQANTELLDQINSYSQDDIAQVNSVFQLSDVSPSDWAFDALRNLVENYNCIVGYP DGTFRGSRPLSRYEFAAGLNACLQQIERMIQSGTSEVTPEDLAALRRLVNEFEAELATLGARVDDLEGRVEFLEDNQFST TTKLGGEVIFNLGGAFGEEKASPLALDSIEFPGGDFDPETVTFEELFDVVDYQDISSEERELLKEFFVGLGIDEDALGFS FGLGDDGDLQDFFTGLADNDDIDDEITFSNRVRLNLDTSFTGKDRLRTRLEAGNITAFDDATGVDSARLGFDTDNGNDVE IGKLFYRFPVGDNVTAYVGAVGMGIDDIFDATSPYFESSGSGALSRFGRFNPIYRGPDGAGAGFNFDLGERFTFSAAYLA DDGDVNNPEEKNGLFNGNYTAGAQLDFKPADDIMFSAFYANRYQKAGDVNLSGSTGSVIANDPTFNSLAVSSNNFGLQGS WLIGDKFNLGGWVGYTTADIEDPNVTGNFDVWNWAVNAALLDVGGEGNVLGLIFGQTPKLTSGNIDFGQIEVNYNDDSDS SYLAELQYRYKLNDNITITPGAYVVFNPNQNDDNDTVVVGSVRTTFSF
Sequences:
>Translated_608_residues MSKTVRTFLSGASVALGATVAFSGTAQANTELLDQINSYSQDDIAQVNSVFQLSDVSPSDWAFDALRNLVENYNCIVGYP DGTFRGSRPLSRYEFAAGLNACLQQIERMIQSGTSEVTPEDLAALRRLVNEFEAELATLGARVDDLEGRVEFLEDNQFST TTKLGGEVIFNLGGAFGEEKASPLALDSIEFPGGDFDPETVTFEELFDVVDYQDISSEERELLKEFFVGLGIDEDALGFS FGLGDDGDLQDFFTGLADNDDIDDEITFSNRVRLNLDTSFTGKDRLRTRLEAGNITAFDDATGVDSARLGFDTDNGNDVE IGKLFYRFPVGDNVTAYVGAVGMGIDDIFDATSPYFESSGSGALSRFGRFNPIYRGPDGAGAGFNFDLGERFTFSAAYLA DDGDVNNPEEKNGLFNGNYTAGAQLDFKPADDIMFSAFYANRYQKAGDVNLSGSTGSVIANDPTFNSLAVSSNNFGLQGS WLIGDKFNLGGWVGYTTADIEDPNVTGNFDVWNWAVNAALLDVGGEGNVLGLIFGQTPKLTSGNIDFGQIEVNYNDDSDS SYLAELQYRYKLNDNITITPGAYVVFNPNQNDDNDTVVVGSVRTTFSF >Mature_607_residues SKTVRTFLSGASVALGATVAFSGTAQANTELLDQINSYSQDDIAQVNSVFQLSDVSPSDWAFDALRNLVENYNCIVGYPD GTFRGSRPLSRYEFAAGLNACLQQIERMIQSGTSEVTPEDLAALRRLVNEFEAELATLGARVDDLEGRVEFLEDNQFSTT TKLGGEVIFNLGGAFGEEKASPLALDSIEFPGGDFDPETVTFEELFDVVDYQDISSEERELLKEFFVGLGIDEDALGFSF GLGDDGDLQDFFTGLADNDDIDDEITFSNRVRLNLDTSFTGKDRLRTRLEAGNITAFDDATGVDSARLGFDTDNGNDVEI GKLFYRFPVGDNVTAYVGAVGMGIDDIFDATSPYFESSGSGALSRFGRFNPIYRGPDGAGAGFNFDLGERFTFSAAYLAD DGDVNNPEEKNGLFNGNYTAGAQLDFKPADDIMFSAFYANRYQKAGDVNLSGSTGSVIANDPTFNSLAVSSNNFGLQGSW LIGDKFNLGGWVGYTTADIEDPNVTGNFDVWNWAVNAALLDVGGEGNVLGLIFGQTPKLTSGNIDFGQIEVNYNDDSDSS YLAELQYRYKLNDNITITPGAYVVFNPNQNDDNDTVVVGSVRTTFSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SLH (S-layer homology) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007049 - InterPro: IPR001119 [H]
Pfam domain/function: PF04966 OprB [H]
EC number: NA
Molecular weight: Translated: 65915; Mature: 65784
Theoretical pI: Translated: 3.76; Mature: 3.76
Prosite motif: PS01072 SLH_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTVRTFLSGASVALGATVAFSGTAQANTELLDQINSYSQDDIAQVNSVFQLSDVSPSD CCHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCCCH WAFDALRNLVENYNCIVGYPDGTFRGSRPLSRYEFAAGLNACLQQIERMIQSGTSEVTPE HHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DLAALRRLVNEFEAELATLGARVDDLEGRVEFLEDNQFSTTTKLGGEVIFNLGGAFGEEK HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHCCCEEEEECCCCCCCCC ASPLALDSIEFPGGDFDPETVTFEELFDVVDYQDISSEERELLKEFFVGLGIDEDALGFS CCCEEEECEECCCCCCCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE FGLGDDGDLQDFFTGLADNDDIDDEITFSNRVRLNLDTSFTGKDRLRTRLEAGNITAFDD ECCCCCCCHHHHHHCCCCCCCCCCCEEECCEEEEEECCCCCCHHHHHHHHCCCCEEEECC ATGVDSARLGFDTDNGNDVEIGKLFYRFPVGDNVTAYVGAVGMGIDDIFDATSPYFESSG CCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEEHHHCCCHHHHHCCCCCCCCCCC SGALSRFGRFNPIYRGPDGAGAGFNFDLGERFTFSAAYLADDGDVNNPEEKNGLFNGNYT CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHCCCCCCCCC AGAQLDFKPADDIMFSAFYANRYQKAGDVNLSGSTGSVIANDPTFNSLAVSSNNFGLQGS CCCEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCEEECCCCCCEEEEECCCCCCEEE WLIGDKFNLGGWVGYTTADIEDPNVTGNFDVWNWAVNAALLDVGGEGNVLGLIFGQTPKL EEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHEEEEEEEEEECCCCCEEEEEECCCCCC TSGNIDFGQIEVNYNDDSDSSYLAELQYRYKLNDNITITPGAYVVFNPNQNDDNDTVVVG CCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCEEECCCEEEEECCCCCCCCCEEEEE SVRTTFSF EEEEECCC >Mature Secondary Structure SKTVRTFLSGASVALGATVAFSGTAQANTELLDQINSYSQDDIAQVNSVFQLSDVSPSD CHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCCCH WAFDALRNLVENYNCIVGYPDGTFRGSRPLSRYEFAAGLNACLQQIERMIQSGTSEVTPE HHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DLAALRRLVNEFEAELATLGARVDDLEGRVEFLEDNQFSTTTKLGGEVIFNLGGAFGEEK HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHCCCEEEEECCCCCCCCC ASPLALDSIEFPGGDFDPETVTFEELFDVVDYQDISSEERELLKEFFVGLGIDEDALGFS CCCEEEECEECCCCCCCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE FGLGDDGDLQDFFTGLADNDDIDDEITFSNRVRLNLDTSFTGKDRLRTRLEAGNITAFDD ECCCCCCCHHHHHHCCCCCCCCCCCEEECCEEEEEECCCCCCHHHHHHHHCCCCEEEECC ATGVDSARLGFDTDNGNDVEIGKLFYRFPVGDNVTAYVGAVGMGIDDIFDATSPYFESSG CCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEEHHHCCCHHHHHCCCCCCCCCCC SGALSRFGRFNPIYRGPDGAGAGFNFDLGERFTFSAAYLADDGDVNNPEEKNGLFNGNYT CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHCCCCCCCCC AGAQLDFKPADDIMFSAFYANRYQKAGDVNLSGSTGSVIANDPTFNSLAVSSNNFGLQGS CCCEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCEEECCCCCCEEEEECCCCCCEEE WLIGDKFNLGGWVGYTTADIEDPNVTGNFDVWNWAVNAALLDVGGEGNVLGLIFGQTPKL EEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHEEEEEEEEEECCCCCEEEEEECCCCCC TSGNIDFGQIEVNYNDDSDSSYLAELQYRYKLNDNITITPGAYVVFNPNQNDDNDTVVVG CCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCEEECCCEEEEECCCCCCCCCEEEEE SVRTTFSF EEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231; 2507869 [H]