Click here to switch to the map view.

The map label for this gene is ycf12

Identifier: 170077602

GI number: 170077602

Start: 1010742

End: 1010873

Strand: Reverse

Name: ycf12

Synonym: SYNPCC7002_A0981

Alternate gene names: 170077602

Gene position: 1010873-1010742 (Counterclockwise)

Preceding gene: 170077604

Following gene: 170077599

Centisome position: 33.61

GC content: 39.39

Gene sequence:

>132_bases
ATGGATTTTATCACAGGTTTTTTTGGTAGCCTCAACTTTGAAGTGATTTTTCAGTTGACTTTTGTCTCTTTGATCCTCAT
TTCGGGGCCTGTTGTTATCTTTTTGCTGGCTATTCGTGGCGGCGATATGTAA

Upstream 100 bases:

>100_bases
TCAGCAAAGCAAGGCAGGCCTGACGGGGTATGATAGACATTGATTTTTAGGAAAAAAAAATTTACCCTGTTTTTTGCATT
AACTCAGGAATAGGAGAAAT

Downstream 100 bases:

>100_bases
TTTTTTCTCAAAAACAAATTGTGCTCAGGGACAACAAACCGACGGGGGAGTTGTCTTTTTTTGTGCTGATTTAGTTGGCT
TGTTCGAGGGTGGCGATCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 43; Mature: 43

Protein sequence:

>43_residues
MDFITGFFGSLNFEVIFQLTFVSLILISGPVVIFLLAIRGGDM

Sequences:

>Translated_43_residues
MDFITGFFGSLNFEVIFQLTFVSLILISGPVVIFLLAIRGGDM
>Mature_43_residues
MDFITGFFGSLNFEVIFQLTFVSLILISGPVVIFLLAIRGGDM

Specific function: A core subunit of photosystem II (PSII)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf12 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCF12_SYNP2 (B1XJC4)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001734240.1
- GeneID:   6057284
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0981
- HOGENOM:   HBG440444
- ProtClustDB:   PRK13686
- GO:   GO:0015979
- HAMAP:   MF_01329
- InterPro:   IPR010284

Pfam domain/function: PF05969 DUF888

EC number: NA

Molecular weight: Translated: 4740; Mature: 4740

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1b65bc58)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFITGFFGSLNFEVIFQLTFVSLILISGPVVIFLLAIRGGDM
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCH
>Mature Secondary Structure
MDFITGFFGSLNFEVIFQLTFVSLILISGPVVIFLLAIRGGDM
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA