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The map label for this gene is radA [H]

Identifier: 170077599

GI number: 170077599

Start: 1006136

End: 1007557

Strand: Reverse

Name: radA [H]

Synonym: SYNPCC7002_A0978

Alternate gene names: 170077599

Gene position: 1007557-1006136 (Counterclockwise)

Preceding gene: 170077602

Following gene: 170077596

Centisome position: 33.5

GC content: 54.57

Gene sequence:

>1422_bases
ATGGCTAAGGCAAAAACGGTTTATGTGTGTCGTGAATGTGGGGCAGAGGCGCGGCAATGGCTCGGTAAATGTCCAGATTG
TGGGGTCTATGGGTCGCTGCAAGAAGAGATCCGCGAAAAGGAAAGCAGTACTGGTGTGAGCCGTACCTGGCACCATAAGC
CGAAAACAACCAGAAAAGCCGCCAGCCCAGTCTCCCGCACTGCGGTGAAATTTACAGATATTGACACTCGCCAACGGATG
CGCTTTGGGTCTGGGTTTGGGGAGTTAGACCGGGTGCTTGGCGGAGGGTTAGTCCCAGGCTCCTTGGTGCTGATTGGGGG
CGATCCGGGCATTGGGAAATCGACATTATTACTCCAGGTGGCCTATCAGCTCAGCACAAGTTTACCAAGAATTTTGTACG
TGTCGGCGGAGGAATCGGGCCAGCAAATCAAACTCAGGGGCGATCGCCTCCGGGATGCAGACCACCCCCCAGAGGAAAAT
TTATATGTGCTGACGGAAACGGGCCTAGAAACAATTTTGGCGGAACTAGAAACCCTCCGGCCCCAGGTGGCAGTAATTGA
CAGTATTCAAACCCTTTACTATTCGGCCCTGGGTTCGGCCCCCGGTTCAGTTTCCCAGGTGCGGGAATGCACGTCGGCTT
TGATGCAGGTGGCGAAGCGGGAAAATATCACGCTGTTTATCGTTGGTCATGTCACCAAGGAAGGGGCGATCGCCGGGCCA
CGGGTTTTGGAACACCTCGTTGATACGGTGCTGTATTTCGAGGGGGATAGATACGCCTCCCATCGGTTGTTGCGTTCCGT
GAAAAATCGCTTTGGGGCCACCCATGAAGTCGGCATTTTCGAGATGGGGGAGCAGGGATTAGAGGAAGTGCTTAATCCGT
CGGAACTTTTCCTCGGTAACCGCGAAGAGGCGACCCCCGGCACTGCCACCGTTGTCGCTTGTGAAGGCACCCGGCCCCTT
TTAGTAGAATTGCAAGCCCTGGTCAGTCCCACCAGTTATTCTTCCCCTAGGCGTTCCACCACGGGCGTTGATTATTCCCG
TCTCCAGCAAATTTTGGCGGTGTTAGAAAAGCGAGTGGGCATTCCCCTTTCTAAGTTAGATGCCTATGTGGCTTCGGCGG
GCGGTCTGACAGTTTCGGAACCCGCCGTTGATCTGGGAATTGCCATTTCTTTGGTGGCCAGTTTCCGCGATCGCCTTGTT
TCACCCCAGACTGTGCTAATCGGCGAAGTGGGCTTAGGGGGACAAATTCGCCCTGTTTCCCACCTCGAAACCCGCCTCAA
GGAAGCGATGAAATTGGGCTTTACCCGTGCCATTGTGCCCAAAGGCCAAAAGTTACCAGACGGTTTAGACCTCGATATTA
TTCCTGTGGCTCGCGTGCTGGATGCAATCGTCGCTGCTCTGCCTGCCGATGGGAAAGAATAG

Upstream 100 bases:

>100_bases
AAAATGAGAAGTTTTTTAAGATTTATTTTGGAAAGTGTGCGGTTTTTCGGGGTGATGCTGCCACCGAGGGAAATTCATTG
TGATGGGGAGATGACAAGTC

Downstream 100 bases:

>100_bases
ACTCCATTAAGGCAATTGGAGTTTGAGCAATTTAACGGACTTATTCTTTATCGTTCATCGCTGTGGTGCCTTTGATCAGC
ATGAATAAACCGCTGGCGAC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MAKAKTVYVCRECGAEARQWLGKCPDCGVYGSLQEEIREKESSTGVSRTWHHKPKTTRKAASPVSRTAVKFTDIDTRQRM
RFGSGFGELDRVLGGGLVPGSLVLIGGDPGIGKSTLLLQVAYQLSTSLPRILYVSAEESGQQIKLRGDRLRDADHPPEEN
LYVLTETGLETILAELETLRPQVAVIDSIQTLYYSALGSAPGSVSQVRECTSALMQVAKRENITLFIVGHVTKEGAIAGP
RVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEVGIFEMGEQGLEEVLNPSELFLGNREEATPGTATVVACEGTRPL
LVELQALVSPTSYSSPRRSTTGVDYSRLQQILAVLEKRVGIPLSKLDAYVASAGGLTVSEPAVDLGIAISLVASFRDRLV
SPQTVLIGEVGLGGQIRPVSHLETRLKEAMKLGFTRAIVPKGQKLPDGLDLDIIPVARVLDAIVAALPADGKE

Sequences:

>Translated_473_residues
MAKAKTVYVCRECGAEARQWLGKCPDCGVYGSLQEEIREKESSTGVSRTWHHKPKTTRKAASPVSRTAVKFTDIDTRQRM
RFGSGFGELDRVLGGGLVPGSLVLIGGDPGIGKSTLLLQVAYQLSTSLPRILYVSAEESGQQIKLRGDRLRDADHPPEEN
LYVLTETGLETILAELETLRPQVAVIDSIQTLYYSALGSAPGSVSQVRECTSALMQVAKRENITLFIVGHVTKEGAIAGP
RVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEVGIFEMGEQGLEEVLNPSELFLGNREEATPGTATVVACEGTRPL
LVELQALVSPTSYSSPRRSTTGVDYSRLQQILAVLEKRVGIPLSKLDAYVASAGGLTVSEPAVDLGIAISLVASFRDRLV
SPQTVLIGEVGLGGQIRPVSHLETRLKEAMKLGFTRAIVPKGQKLPDGLDLDIIPVARVLDAIVAALPADGKE
>Mature_472_residues
AKAKTVYVCRECGAEARQWLGKCPDCGVYGSLQEEIREKESSTGVSRTWHHKPKTTRKAASPVSRTAVKFTDIDTRQRMR
FGSGFGELDRVLGGGLVPGSLVLIGGDPGIGKSTLLLQVAYQLSTSLPRILYVSAEESGQQIKLRGDRLRDADHPPEENL
YVLTETGLETILAELETLRPQVAVIDSIQTLYYSALGSAPGSVSQVRECTSALMQVAKRENITLFIVGHVTKEGAIAGPR
VLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEVGIFEMGEQGLEEVLNPSELFLGNREEATPGTATVVACEGTRPLL
VELQALVSPTSYSSPRRSTTGVDYSRLQQILAVLEKRVGIPLSKLDAYVASAGGLTVSEPAVDLGIAISLVASFRDRLVS
PQTVLIGEVGLGGQIRPVSHLETRLKEAMKLGFTRAIVPKGQKLPDGLDLDIIPVARVLDAIVAALPADGKE

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=467, Percent_Identity=44.3254817987152, Blast_Score=373, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 51089; Mature: 50958

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAKTVYVCRECGAEARQWLGKCPDCGVYGSLQEEIREKESSTGVSRTWHHKPKTTRKA
CCCCCEEHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
ASPVSRTAVKFTDIDTRQRMRFGSGFGELDRVLGGGLVPGSLVLIGGDPGIGKSTLLLQV
CCCHHHHEEEEECCCHHHHHHHCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHH
AYQLSTSLPRILYVSAEESGQQIKLRGDRLRDADHPPEENLYVLTETGLETILAELETLR
HHHHHCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHC
PQVAVIDSIQTLYYSALGSAPGSVSQVRECTSALMQVAKRENITLFIVGHVTKEGAIAGP
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCH
RVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEVGIFEMGEQGLEEVLNPSELFLGN
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHCCCHHHHCCC
REEATPGTATVVACEGTRPLLVELQALVSPTSYSSPRRSTTGVDYSRLQQILAVLEKRVG
CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
IPLSKLDAYVASAGGLTVSEPAVDLGIAISLVASFRDRLVSPQTVLIGEVGLGGQIRPVS
CCHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHH
HLETRLKEAMKLGFTRAIVPKGQKLPDGLDLDIIPVARVLDAIVAALPADGKE
HHHHHHHHHHHHCCHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AKAKTVYVCRECGAEARQWLGKCPDCGVYGSLQEEIREKESSTGVSRTWHHKPKTTRKA
CCCCEEHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
ASPVSRTAVKFTDIDTRQRMRFGSGFGELDRVLGGGLVPGSLVLIGGDPGIGKSTLLLQV
CCCHHHHEEEEECCCHHHHHHHCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHH
AYQLSTSLPRILYVSAEESGQQIKLRGDRLRDADHPPEENLYVLTETGLETILAELETLR
HHHHHCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHC
PQVAVIDSIQTLYYSALGSAPGSVSQVRECTSALMQVAKRENITLFIVGHVTKEGAIAGP
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCH
RVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEVGIFEMGEQGLEEVLNPSELFLGN
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHCCCHHHHCCC
REEATPGTATVVACEGTRPLLVELQALVSPTSYSSPRRSTTGVDYSRLQQILAVLEKRVG
CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
IPLSKLDAYVASAGGLTVSEPAVDLGIAISLVASFRDRLVSPQTVLIGEVGLGGQIRPVS
CCHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHH
HLETRLKEAMKLGFTRAIVPKGQKLPDGLDLDIIPVARVLDAIVAALPADGKE
HHHHHHHHHHHHCCHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]