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The map label for this gene is yciR [C]

Identifier: 170077561

GI number: 170077561

Start: 969345

End: 971099

Strand: Direct

Name: yciR [C]

Synonym: SYNPCC7002_A0939

Alternate gene names: 170077561

Gene position: 969345-971099 (Clockwise)

Preceding gene: 170077560

Following gene: 170077562

Centisome position: 32.23

GC content: 50.71

Gene sequence:

>1755_bases
ATGACGACAATTCTAGTCATTGAAGATGATGATATTGTGCGGAAGCTAATCCGTAAAATCCTAACGCAGCAGCAATATGC
AGTCCTAGAAGCCGCCGGGGGACATCAGGGTGTGCAGTTAGCCTTGGCGCACCAACCGGATTTGATTGTTTGTGATGTGA
TGATGCCGGGGATAGATGGTTATGGGGTCTTGCAAAAACTCCAGGCCGAAGCGGCAACGGCGATGATTCCTTTTGTGTTT
TTAACGGCCCGGGCGGAAAAACAGGACATTCGCCAGGGAATGCGTTTGGGGGCGGATGATTATTTAACAAAACCATTTAC
AAAAGAAGAATTATTGTCGGCGATCGCCATCCGGTTGAGTAAGTTATCTTCTTTGCAACAGCACTATAGCCCCCCAGATT
CATCGCCAAAGGCAGCGCCCCAGACAATGCCCCCAGCACTGAGAAATGATTGCGGCGATCGCTTTAGTCTCCAGGAAACC
TTCGAGGCGATCGCCCTGACCCTCCAGCAGGATGATGCTGCATTTTTACCGCTATTTGTCGTTGGCTTTGAACGGTTTGC
CCAGATCTGTGCTGACCTCGAACCCCAGGAAATTGACACGCTCAACCAGGCGATCATCAATCGTCTAAATCAAGGGCTCC
AAGGGCGAGGAAGAGTCATTTGTTTGGCGGCTGGGGAATTTTGCCTCGTTTTAAATCGCGCCTATGTCCAGGCCGATACC
GGGGCGATCGCCCAGGAAATCCTTGCTGCTTTCGAGCAATTTTTAACCACTGCCACCGAGGAGTTTTTCCTGTCCGTGAG
CCTAGGGATTGCTGAGTATCCCCAGGATGCCGACAATCTCAGGGATTTAGTCGCCCAGGCCCAGGCCGCCCAGCGCCAGG
CCCAAAATTTAGGGGAGCCGCGCTATCAATTTGCCAACGCAATGACGCCGCAAAGTTACCCCAAGGGCCTTGATCTAGCC
GATGATCTGCGGGATGCCTATCACCAGCATCAGTTAACGGTTCATTATCAGCCCCAATGCCAACTGCCAGGAAAAGAGAT
GGTGGGGGCGGAGGCCCTGCTGCGGTGGGAACATCCCCTGAGGGGTTCTATTCTGACTGAGGAAATTTTGGCGATCGCCA
AACCCATCGGTTTACTCGAACTTCTCGATCAATTTGTGCTGACCCAAGCCTGTCGTCAGCTCCGCCGCTGGGCAAACCAA
GACCATCAAACGTTCCAAATGGCGGTCAACCTCTCGGCGACTCAATTTAATCAACCCCACTTCCACCAAGATCTCAGCCA
CTTACTGATTGAAAATAGCTTAAACCCAGCAAACCTCGTGTTAGAACTCACGGAGTCAACCCTCTTAGACAATGCCCCGT
TAACCATTCGCCGCCTCAAGGCGATTAAAACCCTCGGTGTCAAAATTGTTCTGGATGATTTTGGTCTGGGTTATAGCTCT
TTGACTTACCTCAAAAAATTTCCCTTTGATTTCCTCAAACTAGACCCCAGCTTAATCCGCAACATCCACCAAAAATCGGC
ACAACAGACAGTAGTGCGATCGCTAATTAACACGGCCCACCAACAGAAACGCTTAGTGATTGCGGAGGGGGTTGAAAACG
AGACAGAATTAGAGTGTTTGCAGCAACTCAACTGCGATCGCGCCCAGGGTTTTTTGTTGGGCTATCCGATGAGCGTCCCA
GAACTAGAACAGCTACTCTTGTCCAAGACAATATTTCCCCATGATTCGGTAATCTTTGATGCCCCTGACCCCTAA

Upstream 100 bases:

>100_bases
TCGATTTGAGAGCCATGGTACGACCAGCCAAAAACGGCGGCCTTTGGGACAAACGAAAGGAGGGTAGCAAGGGGGCCATA
CCCTAATCACCTATTTTGTT

Downstream 100 bases:

>100_bases
CACCACGGCCCCAGTAAATTCAGTGAATTCTGACCCAAGGCGATCGCCGCCAATCTCCCTGCCAGATAGCCCCTTAAAAA
TTGGTAACGTTGCCCTCCAG

Product: sensory box protein/response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 584; Mature: 583

Protein sequence:

>584_residues
MTTILVIEDDDIVRKLIRKILTQQQYAVLEAAGGHQGVQLALAHQPDLIVCDVMMPGIDGYGVLQKLQAEAATAMIPFVF
LTARAEKQDIRQGMRLGADDYLTKPFTKEELLSAIAIRLSKLSSLQQHYSPPDSSPKAAPQTMPPALRNDCGDRFSLQET
FEAIALTLQQDDAAFLPLFVVGFERFAQICADLEPQEIDTLNQAIINRLNQGLQGRGRVICLAAGEFCLVLNRAYVQADT
GAIAQEILAAFEQFLTTATEEFFLSVSLGIAEYPQDADNLRDLVAQAQAAQRQAQNLGEPRYQFANAMTPQSYPKGLDLA
DDLRDAYHQHQLTVHYQPQCQLPGKEMVGAEALLRWEHPLRGSILTEEILAIAKPIGLLELLDQFVLTQACRQLRRWANQ
DHQTFQMAVNLSATQFNQPHFHQDLSHLLIENSLNPANLVLELTESTLLDNAPLTIRRLKAIKTLGVKIVLDDFGLGYSS
LTYLKKFPFDFLKLDPSLIRNIHQKSAQQTVVRSLINTAHQQKRLVIAEGVENETELECLQQLNCDRAQGFLLGYPMSVP
ELEQLLLSKTIFPHDSVIFDAPDP

Sequences:

>Translated_584_residues
MTTILVIEDDDIVRKLIRKILTQQQYAVLEAAGGHQGVQLALAHQPDLIVCDVMMPGIDGYGVLQKLQAEAATAMIPFVF
LTARAEKQDIRQGMRLGADDYLTKPFTKEELLSAIAIRLSKLSSLQQHYSPPDSSPKAAPQTMPPALRNDCGDRFSLQET
FEAIALTLQQDDAAFLPLFVVGFERFAQICADLEPQEIDTLNQAIINRLNQGLQGRGRVICLAAGEFCLVLNRAYVQADT
GAIAQEILAAFEQFLTTATEEFFLSVSLGIAEYPQDADNLRDLVAQAQAAQRQAQNLGEPRYQFANAMTPQSYPKGLDLA
DDLRDAYHQHQLTVHYQPQCQLPGKEMVGAEALLRWEHPLRGSILTEEILAIAKPIGLLELLDQFVLTQACRQLRRWANQ
DHQTFQMAVNLSATQFNQPHFHQDLSHLLIENSLNPANLVLELTESTLLDNAPLTIRRLKAIKTLGVKIVLDDFGLGYSS
LTYLKKFPFDFLKLDPSLIRNIHQKSAQQTVVRSLINTAHQQKRLVIAEGVENETELECLQQLNCDRAQGFLLGYPMSVP
ELEQLLLSKTIFPHDSVIFDAPDP
>Mature_583_residues
TTILVIEDDDIVRKLIRKILTQQQYAVLEAAGGHQGVQLALAHQPDLIVCDVMMPGIDGYGVLQKLQAEAATAMIPFVFL
TARAEKQDIRQGMRLGADDYLTKPFTKEELLSAIAIRLSKLSSLQQHYSPPDSSPKAAPQTMPPALRNDCGDRFSLQETF
EAIALTLQQDDAAFLPLFVVGFERFAQICADLEPQEIDTLNQAIINRLNQGLQGRGRVICLAAGEFCLVLNRAYVQADTG
AIAQEILAAFEQFLTTATEEFFLSVSLGIAEYPQDADNLRDLVAQAQAAQRQAQNLGEPRYQFANAMTPQSYPKGLDLAD
DLRDAYHQHQLTVHYQPQCQLPGKEMVGAEALLRWEHPLRGSILTEEILAIAKPIGLLELLDQFVLTQACRQLRRWANQD
HQTFQMAVNLSATQFNQPHFHQDLSHLLIENSLNPANLVLELTESTLLDNAPLTIRRLKAIKTLGVKIVLDDFGLGYSSL
TYLKKFPFDFLKLDPSLIRNIHQKSAQQTVVRSLINTAHQQKRLVIAEGVENETELECLQQLNCDRAQGFLLGYPMSVPE
LEQLLLSKTIFPHDSVIFDAPDP

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=346, Percent_Identity=32.0809248554913, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI87081921, Length=399, Percent_Identity=25.8145363408521, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI226510982, Length=443, Percent_Identity=25.2821670428894, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=30.7053941908714, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=29.1497975708502, Blast_Score=118, Evalue=9e-28,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=29.6610169491525, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=31.8181818181818, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788849, Length=238, Percent_Identity=32.7731092436975, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=26.1224489795918, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1786507, Length=282, Percent_Identity=25.177304964539, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87081980, Length=240, Percent_Identity=28.3333333333333, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1786599, Length=122, Percent_Identity=37.7049180327869, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI87082096, Length=257, Percent_Identity=26.4591439688716, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87082012, Length=127, Percent_Identity=35.4330708661417, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1789809, Length=112, Percent_Identity=36.6071428571429, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1786911, Length=148, Percent_Identity=32.4324324324324, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786784, Length=118, Percent_Identity=33.8983050847458, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1790863, Length=108, Percent_Identity=34.2592592592593, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788550, Length=158, Percent_Identity=27.8481012658228, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1789650, Length=188, Percent_Identity=23.4042553191489, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787410, Length=144, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1789402, Length=119, Percent_Identity=34.453781512605, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1788394, Length=118, Percent_Identity=31.3559322033898, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1790860, Length=123, Percent_Identity=30.0813008130081, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI2367329, Length=136, Percent_Identity=33.0882352941176, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 65212; Mature: 65080

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTILVIEDDDIVRKLIRKILTQQQYAVLEAAGGHQGVQLALAHQPDLIVCDVMMPGIDG
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCC
YGVLQKLQAEAATAMIPFVFLTARAEKQDIRQGMRLGADDYLTKPFTKEELLSAIAIRLS
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHH
KLSSLQQHYSPPDSSPKAAPQTMPPALRNDCGDRFSLQETFEAIALTLQQDDAAFLPLFV
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
VGFERFAQICADLEPQEIDTLNQAIINRLNQGLQGRGRVICLAAGEFCLVLNRAYVQADT
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCH
GAIAQEILAAFEQFLTTATEEFFLSVSLGIAEYPQDADNLRDLVAQAQAAQRQAQNLGEP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCH
RYQFANAMTPQSYPKGLDLADDLRDAYHQHQLTVHYQPQCQLPGKEMVGAEALLRWEHPL
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHCCCCC
RGSILTEEILAIAKPIGLLELLDQFVLTQACRQLRRWANQDHQTFQMAVNLSATQFNQPH
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHEEECCHHCCCCCH
FHQDLSHLLIENSLNPANLVLELTESTLLDNAPLTIRRLKAIKTLGVKIVLDDFGLGYSS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCCCHHH
LTYLKKFPFDFLKLDPSLIRNIHQKSAQQTVVRSLINTAHQQKRLVIAEGVENETELECL
HHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHH
QQLNCDRAQGFLLGYPMSVPELEQLLLSKTIFPHDSVIFDAPDP
HHCCCCHHCCEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCCC
>Mature Secondary Structure 
TTILVIEDDDIVRKLIRKILTQQQYAVLEAAGGHQGVQLALAHQPDLIVCDVMMPGIDG
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCC
YGVLQKLQAEAATAMIPFVFLTARAEKQDIRQGMRLGADDYLTKPFTKEELLSAIAIRLS
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHH
KLSSLQQHYSPPDSSPKAAPQTMPPALRNDCGDRFSLQETFEAIALTLQQDDAAFLPLFV
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
VGFERFAQICADLEPQEIDTLNQAIINRLNQGLQGRGRVICLAAGEFCLVLNRAYVQADT
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCH
GAIAQEILAAFEQFLTTATEEFFLSVSLGIAEYPQDADNLRDLVAQAQAAQRQAQNLGEP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCH
RYQFANAMTPQSYPKGLDLADDLRDAYHQHQLTVHYQPQCQLPGKEMVGAEALLRWEHPL
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHCCCCC
RGSILTEEILAIAKPIGLLELLDQFVLTQACRQLRRWANQDHQTFQMAVNLSATQFNQPH
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHEEECCHHCCCCCH
FHQDLSHLLIENSLNPANLVLELTESTLLDNAPLTIRRLKAIKTLGVKIVLDDFGLGYSS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCCCHHH
LTYLKKFPFDFLKLDPSLIRNIHQKSAQQTVVRSLINTAHQQKRLVIAEGVENETELECL
HHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHH
QQLNCDRAQGFLLGYPMSVPELEQLLLSKTIFPHDSVIFDAPDP
HHCCCCHHCCEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]