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The map label for this gene is rplY [H]

Identifier: 170077505

GI number: 170077505

Start: 912297

End: 912590

Strand: Direct

Name: rplY [H]

Synonym: SYNPCC7002_A0883

Alternate gene names: 170077505

Gene position: 912297-912590 (Clockwise)

Preceding gene: 170077504

Following gene: 170077506

Centisome position: 30.33

GC content: 51.02

Gene sequence:

>294_bases
ATGTCTTTAACGATTGAATGTCAAGCTCGCCCTGAAGGGGTTAACCCCCGTGCACTCCGCCGTGACGGCCTCCTACCCGT
CAACCTCTATGGCCATAAGGGTGCTGATTCTGATGTTTTTGTGGTGAACTACAAAGACGCCCTAACGTTGCTGAAAAAAG
TAACCCCCAACGAAACCGTAGTTGAAGTCAAAACCCCCGATTGGTCTGGCACTGCAGTTGTGCGAGAAATCCAGTCCCAC
CCCTGGAAGCGGAATTTACTACACCTCAGCTTTTTCCACACGGATGCTGCGTAA

Upstream 100 bases:

>100_bases
CCCAAACGGGCTTTGTTGGATCGTAACGGTGAACCCATCGGCTAAGCCTGCTATTTTTTAACTTTTTATTTTCTAACGCT
ATTTATTTAGGTTATTTCCC

Downstream 100 bases:

>100_bases
GGACACCTAATTTGATTGGTTAAGATGGGGAGGGCGTCACAGAAAGTGCCCTCTTTTTTGTGGCTTGATAGTGAATGGGA
ACAGTTATGACAACGGCAAC

Product: 50S ribosomal protein L25

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MSLTIECQARPEGVNPRALRRDGLLPVNLYGHKGADSDVFVVNYKDALTLLKKVTPNETVVEVKTPDWSGTAVVREIQSH
PWKRNLLHLSFFHTDAA

Sequences:

>Translated_97_residues
MSLTIECQARPEGVNPRALRRDGLLPVNLYGHKGADSDVFVVNYKDALTLLKKVTPNETVVEVKTPDWSGTAVVREIQSH
PWKRNLLHLSFFHTDAA
>Mature_96_residues
SLTIECQARPEGVNPRALRRDGLLPVNLYGHKGADSDVFVVNYKDALTLLKKVTPNETVVEVKTPDWSGTAVVREIQSHP
WKRNLLHLSFFHTDAA

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance [H]

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020055
- ProDom:   PD012503 [H]

Pfam domain/function: PF01386 Ribosomal_L25p [H]

EC number: NA

Molecular weight: Translated: 10881; Mature: 10749

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTIECQARPEGVNPRALRRDGLLPVNLYGHKGADSDVFVVNYKDALTLLKKVTPNETV
CCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCEE
VEVKTPDWSGTAVVREIQSHPWKRNLLHLSFFHTDAA
EEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
>Mature Secondary Structure 
SLTIECQARPEGVNPRALRRDGLLPVNLYGHKGADSDVFVVNYKDALTLLKKVTPNETV
CEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCEE
VEVKTPDWSGTAVVREIQSHPWKRNLLHLSFFHTDAA
EEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 10050320 [H]