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The map label for this gene is secF [H]

Identifier: 170077280

GI number: 170077280

Start: 689280

End: 690092

Strand: Direct

Name: secF [H]

Synonym: SYNPCC7002_A0657

Alternate gene names: 170077280

Gene position: 689280-690092 (Clockwise)

Preceding gene: 170077279

Following gene: 170077281

Centisome position: 22.91

GC content: 51.78

Gene sequence:

>813_bases
GTGGCCCTCGACTGTACGGTGGCTGGCAACTGTACTGATCCTTTAGAAACAGCGACAATTCAAAACGTGGTGAATAACCA
GGGGGTCGGCAGTAGTACGGTGCAAATTTTGGGCCAAGAGCGGACAACGTTTTCGGTGCGGACACCGCAGCTCGATGTGG
ATCAACGCAGCCGTTTGCTCGACGCCCTAGAATCCGAAGTGGGCGCCCTAGATCCTGGCACGATCCAAATTGACTCGGTG
GGGCCAACCATTGGTCGGGAATTGTTTGTCCAAGGGATGCTCGCCCTCCTGGTTTCTTTTTTCGGGATTATTGTCTACTT
GAGTATCCGCTTTCAGTTCGATTATGCGCTGTTTGCGATCGCCGCATTGTTCCATGATGTGCTGGTCACGGCTGGTGTCT
TTGCGCTACTCGGTCTGGTGTTGGGCGTTGAAGTAGATAGCCTTTTCCTCGTGGCCCTACTGACGATTATTGGTTTTTCT
GTGAATGATACGGTGGTCATTTATGACCGCGTTCGTGAGAATCTCAAGGCTGACGAGGGAGACAACATCGATCAAGTTGT
TGATCATTCCGTCCAGCAAACCCTGGGCCGTTCGATCAATACCACCCTCACCACCCTATTGCCGCTGGTGGCGATCTTTT
TGTTCGGTGGTTCGACCCTCAAGTTTTTTGCCCTCGCCTTGATTATTGGGTTTATTTGCGGCTCTTACTCTAGTATTTTT
GTCGCCAGTACCCTCTTGGCCTGGTGGCGTAACCGTAATGGCCAACCCCCCACGGTCACCAAAGAAGCGGTGAATGTTAC
AGAATTGTCCTAG

Upstream 100 bases:

>100_bases
CGCCATCCTTGCGAGTGTGTTGTTTATGGGCATTTCCTTCAACCAACTCCAAGCACCCCTCCGACCCAGTCTCGACTTTG
TTGGGGGCACAAAAATCCAA

Downstream 100 bases:

>100_bases
CCATTGCAGGGGAACTTCCCGGTAACGGCGGCAATCCCAGGATTTGGCCTGACCCACTCGGTAAAGATGTTTAGGGTGAA
AAAATATGGGCGATCGCCAA

Product: protein-export membrane protein SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MALDCTVAGNCTDPLETATIQNVVNNQGVGSSTVQILGQERTTFSVRTPQLDVDQRSRLLDALESEVGALDPGTIQIDSV
GPTIGRELFVQGMLALLVSFFGIIVYLSIRFQFDYALFAIAALFHDVLVTAGVFALLGLVLGVEVDSLFLVALLTIIGFS
VNDTVVIYDRVRENLKADEGDNIDQVVDHSVQQTLGRSINTTLTTLLPLVAIFLFGGSTLKFFALALIIGFICGSYSSIF
VASTLLAWWRNRNGQPPTVTKEAVNVTELS

Sequences:

>Translated_270_residues
MALDCTVAGNCTDPLETATIQNVVNNQGVGSSTVQILGQERTTFSVRTPQLDVDQRSRLLDALESEVGALDPGTIQIDSV
GPTIGRELFVQGMLALLVSFFGIIVYLSIRFQFDYALFAIAALFHDVLVTAGVFALLGLVLGVEVDSLFLVALLTIIGFS
VNDTVVIYDRVRENLKADEGDNIDQVVDHSVQQTLGRSINTTLTTLLPLVAIFLFGGSTLKFFALALIIGFICGSYSSIF
VASTLLAWWRNRNGQPPTVTKEAVNVTELS
>Mature_269_residues
ALDCTVAGNCTDPLETATIQNVVNNQGVGSSTVQILGQERTTFSVRTPQLDVDQRSRLLDALESEVGALDPGTIQIDSVG
PTIGRELFVQGMLALLVSFFGIIVYLSIRFQFDYALFAIAALFHDVLVTAGVFALLGLVLGVEVDSLFLVALLTIIGFSV
NDTVVIYDRVRENLKADEGDNIDQVVDHSVQQTLGRSINTTLTTLLPLVAIFLFGGSTLKFFALALIIGFICGSYSSIFV
ASTLLAWWRNRNGQPPTVTKEAVNVTELS

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=237, Percent_Identity=30.8016877637131, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 29150; Mature: 29019

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALDCTVAGNCTDPLETATIQNVVNNQGVGSSTVQILGQERTTFSVRTPQLDVDQRSRLL
CCEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
DALESEVGALDPGTIQIDSVGPTIGRELFVQGMLALLVSFFGIIVYLSIRFQFDYALFAI
HHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALFHDVLVTAGVFALLGLVLGVEVDSLFLVALLTIIGFSVNDTVVIYDRVRENLKADEG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCC
DNIDQVVDHSVQQTLGRSINTTLTTLLPLVAIFLFGGSTLKFFALALIIGFICGSYSSIF
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
VASTLLAWWRNRNGQPPTVTKEAVNVTELS
HHHHHHHHHHCCCCCCCCCHHHHCCHHCCC
>Mature Secondary Structure 
ALDCTVAGNCTDPLETATIQNVVNNQGVGSSTVQILGQERTTFSVRTPQLDVDQRSRLL
CEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
DALESEVGALDPGTIQIDSVGPTIGRELFVQGMLALLVSFFGIIVYLSIRFQFDYALFAI
HHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALFHDVLVTAGVFALLGLVLGVEVDSLFLVALLTIIGFSVNDTVVIYDRVRENLKADEG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCC
DNIDQVVDHSVQQTLGRSINTTLTTLLPLVAIFLFGGSTLKFFALALIIGFICGSYSSIF
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
VASTLLAWWRNRNGQPPTVTKEAVNVTELS
HHHHHHHHHHCCCCCCCCCHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]