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The map label for this gene is secD [H]

Identifier: 170077279

GI number: 170077279

Start: 687685

End: 689088

Strand: Direct

Name: secD [H]

Synonym: SYNPCC7002_A0656

Alternate gene names: 170077279

Gene position: 687685-689088 (Clockwise)

Preceding gene: 170077278

Following gene: 170077280

Centisome position: 22.86

GC content: 52.92

Gene sequence:

>1404_bases
ATGCAAAAACAACGGTTAATCATAGTTGCAATTCTTTTTTTGGTGGCGATCGCCATCACGATTTTGACAACCTTACCCCT
CCAGCTCGGTCTGGATCTCAAAGGTGGTGCCCAACTGACGATCCAGGTGCAACCCAATGCCGAAGGAGTCGTCGTTGAGG
CCGATGATACAGCTGCCGTGAAGCGAGTCATCGAAAATCGCATCAATGGTCTAGGAGTGGCCGAACCCATCACCCAACTC
GTGGGGAACGACCGGATCCTCGTGCAATTGCCTGGAGTGACAGATCCTGAGCAGGCTGAACGAGTTCTCGGTGGCACCGC
TCAGCTCGAGTTTCGGCCCCAAAACCCTGGCACTGAAGCCGAATTCCAAGAAAAGTACGCCCTCCGCCGCCAACTCGACG
CCCAGTTAACCAGTCTCCGTGGCAGTGCAAGCCCTGCCGCTAGCGATGCCGAGATCGAAGAATTAGAAACCAATATTGAC
AGTCTCGATCAAGAGATTCTCGCTCTGTTTGAACCCGTTGGTCTAGTCGGCGAATACGTCACCAATGCCCAACCTGCCCC
CACCCAAACGGGCAACAGTTGGCAAGTCTTTCTCAATTTCAATAGTGAAGGGGCCGAACTTTTTGCAGAAATCACAAAAG
GTCTAGCTGGTACAGGCCGGAGTGTCGGCATTTTCTTAGATGATGCCCTCCTTAGCGCCCCCACCGTTGGCCCAGAATAT
ACTGCCCAAGGGATCGCCGGGGGGAACGTGACCATTACCGGCAACTTTGACATTGATACCGCCAGTGATCTCGCCATTCA
GATTCGGGGTGGGTCGTTACCCTTCCCGGTGGCTGTGGTCGAGAACCGTACCGTAGGGGCAACCCTAGGCCAAGATTCCA
TTCGCCAAAGTATCTATGCAGGGATTGCGGGCCTAATTCTGGTGTTGATCTTTGTGGCAGTCTATTACCGTTTGCCAGGG
CTGATCGCAGATGTGGCGTTAGTGGTTTATACCCTCCTCACTTTGGCCTGCTACTCCCTTGTGGGGGTTACGCTGACGTT
ACCGGGGATTGCTGGTTTTATTCTCAGTATTGGTATGGCCGTGGATGCAAATGTGCTGATCTTTGAGCGCACCCGGGAGG
AAATCTATAAGGGGAATACCCTATACCGAGCCGTGGAATCGGGATTTTTTAACGCTTTCTCCAGCATTCTCGACAGTAAT
GTCACCACTTTGATCGCCTGTGCGGCCCTCTTTTTCTTGGGTTCGGGTTTGGTAAAAGGTTTTGCGTTGACCTTGGCGAT
CGGGGTGGGAGTGAGTATGTTTACGGCAGTGACTTGCAGCCGCACTTTACTGCTGTTAACGGTATTGGGCTTACCGGCGG
TGCGCCAAAATCCCAAGTTGTTTGCGCCCAAAGTCCCCAACTAA

Upstream 100 bases:

>100_bases
ATCGTCCAACCGGACAACATCGTCGAAGCAGTGCAAAATATGTTGGCCCTGAACGTCTAAACACCAGCGACCAACTGCGG
TTCATCCTCCTAGATCCATC

Downstream 100 bases:

>100_bases
TTTCCTTTGCCCTCTAGTCTGTTGTTAACCCGATGACTTTTAAATTTAGCGTCATTAAACAGCGTCTCCTTTGGTGGTCC
ATCTCGGCGATCGCCATCCT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MQKQRLIIVAILFLVAIAITILTTLPLQLGLDLKGGAQLTIQVQPNAEGVVVEADDTAAVKRVIENRINGLGVAEPITQL
VGNDRILVQLPGVTDPEQAERVLGGTAQLEFRPQNPGTEAEFQEKYALRRQLDAQLTSLRGSASPAASDAEIEELETNID
SLDQEILALFEPVGLVGEYVTNAQPAPTQTGNSWQVFLNFNSEGAELFAEITKGLAGTGRSVGIFLDDALLSAPTVGPEY
TAQGIAGGNVTITGNFDIDTASDLAIQIRGGSLPFPVAVVENRTVGATLGQDSIRQSIYAGIAGLILVLIFVAVYYRLPG
LIADVALVVYTLLTLACYSLVGVTLTLPGIAGFILSIGMAVDANVLIFERTREEIYKGNTLYRAVESGFFNAFSSILDSN
VTTLIACAALFFLGSGLVKGFALTLAIGVGVSMFTAVTCSRTLLLLTVLGLPAVRQNPKLFAPKVPN

Sequences:

>Translated_467_residues
MQKQRLIIVAILFLVAIAITILTTLPLQLGLDLKGGAQLTIQVQPNAEGVVVEADDTAAVKRVIENRINGLGVAEPITQL
VGNDRILVQLPGVTDPEQAERVLGGTAQLEFRPQNPGTEAEFQEKYALRRQLDAQLTSLRGSASPAASDAEIEELETNID
SLDQEILALFEPVGLVGEYVTNAQPAPTQTGNSWQVFLNFNSEGAELFAEITKGLAGTGRSVGIFLDDALLSAPTVGPEY
TAQGIAGGNVTITGNFDIDTASDLAIQIRGGSLPFPVAVVENRTVGATLGQDSIRQSIYAGIAGLILVLIFVAVYYRLPG
LIADVALVVYTLLTLACYSLVGVTLTLPGIAGFILSIGMAVDANVLIFERTREEIYKGNTLYRAVESGFFNAFSSILDSN
VTTLIACAALFFLGSGLVKGFALTLAIGVGVSMFTAVTCSRTLLLLTVLGLPAVRQNPKLFAPKVPN
>Mature_467_residues
MQKQRLIIVAILFLVAIAITILTTLPLQLGLDLKGGAQLTIQVQPNAEGVVVEADDTAAVKRVIENRINGLGVAEPITQL
VGNDRILVQLPGVTDPEQAERVLGGTAQLEFRPQNPGTEAEFQEKYALRRQLDAQLTSLRGSASPAASDAEIEELETNID
SLDQEILALFEPVGLVGEYVTNAQPAPTQTGNSWQVFLNFNSEGAELFAEITKGLAGTGRSVGIFLDDALLSAPTVGPEY
TAQGIAGGNVTITGNFDIDTASDLAIQIRGGSLPFPVAVVENRTVGATLGQDSIRQSIYAGIAGLILVLIFVAVYYRLPG
LIADVALVVYTLLTLACYSLVGVTLTLPGIAGFILSIGMAVDANVLIFERTREEIYKGNTLYRAVESGFFNAFSSILDSN
VTTLIACAALFFLGSGLVKGFALTLAIGVGVSMFTAVTCSRTLLLLTVLGLPAVRQNPKLFAPKVPN

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=397, Percent_Identity=35.7682619647355, Blast_Score=224, Evalue=9e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 49378; Mature: 49378

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS00359 RIBOSOMAL_L11

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKQRLIIVAILFLVAIAITILTTLPLQLGLDLKGGAQLTIQVQPNAEGVVVEADDTAAV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCHHHH
KRVIENRINGLGVAEPITQLVGNDRILVQLPGVTDPEQAERVLGGTAQLEFRPQNPGTEA
HHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCEEEEEECCCCCCCH
EFQEKYALRRQLDAQLTSLRGSASPAASDAEIEELETNIDSLDQEILALFEPVGLVGEYV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TNAQPAPTQTGNSWQVFLNFNSEGAELFAEITKGLAGTGRSVGIFLDDALLSAPTVGPEY
CCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCC
TAQGIAGGNVTITGNFDIDTASDLAIQIRGGSLPFPVAVVENRTVGATLGQDSIRQSIYA
CCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
GIAGLILVLIFVAVYYRLPGLIADVALVVYTLLTLACYSLVGVTLTLPGIAGFILSIGMA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDANVLIFERTREEIYKGNTLYRAVESGFFNAFSSILDSNVTTLIACAALFFLGSGLVKG
CCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
FALTLAIGVGVSMFTAVTCSRTLLLLTVLGLPAVRQNPKLFAPKVPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQKQRLIIVAILFLVAIAITILTTLPLQLGLDLKGGAQLTIQVQPNAEGVVVEADDTAAV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCHHHH
KRVIENRINGLGVAEPITQLVGNDRILVQLPGVTDPEQAERVLGGTAQLEFRPQNPGTEA
HHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCEEEEEECCCCCCCH
EFQEKYALRRQLDAQLTSLRGSASPAASDAEIEELETNIDSLDQEILALFEPVGLVGEYV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TNAQPAPTQTGNSWQVFLNFNSEGAELFAEITKGLAGTGRSVGIFLDDALLSAPTVGPEY
CCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCC
TAQGIAGGNVTITGNFDIDTASDLAIQIRGGSLPFPVAVVENRTVGATLGQDSIRQSIYA
CCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
GIAGLILVLIFVAVYYRLPGLIADVALVVYTLLTLACYSLVGVTLTLPGIAGFILSIGMA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDANVLIFERTREEIYKGNTLYRAVESGFFNAFSSILDSNVTTLIACAALFFLGSGLVKG
CCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
FALTLAIGVGVSMFTAVTCSRTLLLLTVLGLPAVRQNPKLFAPKVPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]