| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077268
Identifier: 170077268
GI number: 170077268
Start: 675502
End: 676212
Strand: Reverse
Name: 170077268
Synonym: SYNPCC7002_A0645
Alternate gene names: NA
Gene position: 676212-675502 (Counterclockwise)
Preceding gene: 170077271
Following gene: 170077267
Centisome position: 22.48
GC content: 53.02
Gene sequence:
>711_bases ATGTCCATCTCCACCGCCGACCCCCAGCTCATTACGGATCCACTCCACAGCCCTTTCCCTATCCCTTGGCAGTGGATTTT AGAGACCCAAGCTACGGTGGCCGCCGGGAACCAGAGTAGCGCCGATGTGTGTCGCAGTCCTGCCTTAAATAATGGTCGCC ATCAGTACGCCGCCTACAGTCGTATCCAGTTAGCACTGCGCCCGCAACTCCAGGAAAGTCAGGTCACCAGTGTTTTATTT GTGGAAAATTTGCAAACAGGCATTTTAAGCACGGTAATGGCGCGATCGCCCCTCGCCCCCCAAGCATTTCAAGCAGTCGA AGGGAACGATGCTGCAGGTTTAATTTCGCTATTGATTCCCGTATCTTGGTCTGCCGATGGCCAAAGGCTCCTGGCGCGGC AGTTTGAAGGCTTTTTTAACAGTGGCGTGATGTCAGATTTTGCGGTGGTCTGGGATGCCAAAACCCAACGGAGTATCACC CTCCAACCCAATATCGAAGCCGAATATAGCCATGCCATTTTGTTGGGCTGGAGTGAGCAATATGCTGAGGATGTCCTATT CCAAACCGGGGTGATGGGGGAGGAAACCTGGCCCATTTGGCGGGTGAGTCCCAGTGGGGATACAAACCTTGCCAGGGAAA ATCACGGCGTGGTCTACGGTGATCTCCTTTCTCCGGCTTGGTTTGGCAGTGACGGAGAATTTAACATTTAA
Upstream 100 bases:
>100_bases ATCGCTATTCTAATGCCCTAGAGACCCCACCGCTCAGGTTTATGTAAACCATTTCCTGGCCGTTCTGTCCTTTTTTTGCC GCTCTTTCCCCCCTGAGATC
Downstream 100 bases:
>100_bases TGTCAACTTCGGAAAAAACTGCGGCGATCGCCCCCAGCCCCTTTTACACTGACTAAAAACGATATAAAGATTTTTATCGA AACTTGCTATGACACAGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MSISTADPQLITDPLHSPFPIPWQWILETQATVAAGNQSSADVCRSPALNNGRHQYAAYSRIQLALRPQLQESQVTSVLF VENLQTGILSTVMARSPLAPQAFQAVEGNDAAGLISLLIPVSWSADGQRLLARQFEGFFNSGVMSDFAVVWDAKTQRSIT LQPNIEAEYSHAILLGWSEQYAEDVLFQTGVMGEETWPIWRVSPSGDTNLARENHGVVYGDLLSPAWFGSDGEFNI
Sequences:
>Translated_236_residues MSISTADPQLITDPLHSPFPIPWQWILETQATVAAGNQSSADVCRSPALNNGRHQYAAYSRIQLALRPQLQESQVTSVLF VENLQTGILSTVMARSPLAPQAFQAVEGNDAAGLISLLIPVSWSADGQRLLARQFEGFFNSGVMSDFAVVWDAKTQRSIT LQPNIEAEYSHAILLGWSEQYAEDVLFQTGVMGEETWPIWRVSPSGDTNLARENHGVVYGDLLSPAWFGSDGEFNI >Mature_235_residues SISTADPQLITDPLHSPFPIPWQWILETQATVAAGNQSSADVCRSPALNNGRHQYAAYSRIQLALRPQLQESQVTSVLFV ENLQTGILSTVMARSPLAPQAFQAVEGNDAAGLISLLIPVSWSADGQRLLARQFEGFFNSGVMSDFAVVWDAKTQRSITL QPNIEAEYSHAILLGWSEQYAEDVLFQTGVMGEETWPIWRVSPSGDTNLARENHGVVYGDLLSPAWFGSDGEFNI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25908; Mature: 25777
Theoretical pI: Translated: 4.25; Mature: 4.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISTADPQLITDPLHSPFPIPWQWILETQATVAAGNQSSADVCRSPALNNGRHQYAAYS CCCCCCCCCCEECCCCCCCCCCHHHEEECCCEEECCCCCCHHHHHCCCCCCCCHHHHHHH RIQLALRPQLQESQVTSVLFVENLQTGILSTVMARSPLAPQAFQAVEGNDAAGLISLLIP HEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHEEE VSWSADGQRLLARQFEGFFNSGVMSDFAVVWDAKTQRSITLQPNIEAEYSHAILLGWSEQ CCCCCCHHHHHHHHHHHHHCCCCHHCEEEEEECCCCCEEEECCCCCCCCCEEEEEECCHH YAEDVLFQTGVMGEETWPIWRVSPSGDTNLARENHGVVYGDLLSPAWFGSDGEFNI HHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCC >Mature Secondary Structure SISTADPQLITDPLHSPFPIPWQWILETQATVAAGNQSSADVCRSPALNNGRHQYAAYS CCCCCCCCCEECCCCCCCCCCHHHEEECCCEEECCCCCCHHHHHCCCCCCCCHHHHHHH RIQLALRPQLQESQVTSVLFVENLQTGILSTVMARSPLAPQAFQAVEGNDAAGLISLLIP HEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHEEE VSWSADGQRLLARQFEGFFNSGVMSDFAVVWDAKTQRSITLQPNIEAEYSHAILLGWSEQ CCCCCCHHHHHHHHHHHHHCCCCHHCEEEEEECCCCCEEEECCCCCCCCCEEEEEECCHH YAEDVLFQTGVMGEETWPIWRVSPSGDTNLARENHGVVYGDLLSPAWFGSDGEFNI HHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA