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The map label for this gene is rimO

Identifier: 170077243

GI number: 170077243

Start: 649177

End: 650496

Strand: Reverse

Name: rimO

Synonym: SYNPCC7002_A0619

Alternate gene names: 170077243

Gene position: 650496-649177 (Counterclockwise)

Preceding gene: 170077244

Following gene: 170077242

Centisome position: 21.63

GC content: 50.83

Gene sequence:

>1320_bases
ATGACCACAAAACCGACAATCGCCATTTCCCATCTTGGTTGTGAAAAAAACCGCATCGATTCCGAACATATGATTGGGCT
ATTGGTAAATGCTGGTTATGAGGTCGATGCAAACGAAGAACTGGCCGATTACGTCATCGTCAACACCTGTAGCTTCATCG
AAGATGCCCGCGCCGAATCTGTGCGTACCCTAGTGGAATTGGCAGAGGCAAACAAGAAAATCGTCATTTCCGGTTGCATG
GCGCAACATTTCCAAGAGCAGCTTTTAGAAGAATTGCCTGAAGCCGTCGCCCTCGTAGGCACTGGGGATTATCACAAAAT
TGTTGACGTGATTCAACGCACCGAACAGGGTGAGATTGTAAAGGAAGTTTCCCAAGAAATCACCTATATCGCTGACGAAA
CTGTGCCCCGCTACCGCACCACCAACGAAGCGGTGGCTTATCTCCGGGTGGCGGAAGGCTGTGATTACCGCTGTGCCTTT
TGCATCATCCCTCACCTCAGAGGGGATCAGCGATCGCGCCCCATTGAGTCCATCGTGGCCGAAGCCAAACAATTGGCTGA
GCAAGGCGTCCAGGAAATTATTTTAATTTCCCAGATCACCACCAACTACGGCAAAGATATTTACGGCAAACCCAAATTGG
CAGAACTTCTCAGAGCCTTGGGGGGTGTCGATGTACCTTGGATCCGCATCCACTACGCCTATCCGACGGGGTTAACCCCT
GAGGTGATCGCGGCGATGCGTGATACCCCCAACGTTATTCCCTATCTGGATCTCCCGCTACAACATTCCCATCCAGATAT
TCTTCGGGCGATGAATCGTCCTTGGCAAGGTCGCGTCAATGATCGCATCATTGAAGATCTTAAAAAGGCACTCCCCGATG
CAATTTTGCGCACCACCTTTATCGTGGGTTTCCCCGGCGAGACGGAAGAACACTTCCAGCACCTCGTGGATTTTGTGAAA
CGTCACGAATTTGATCATGTGGGTGTGTTTACTTTCTCCGCTGAGGAAGGAACCCCTGCCATTGATTTACCGAACCAACT
ACCGCAATCTGTCAAAGATAGCCGTCGGGATGCTCTGATGGAAATTCAACAGCCGATTGCTGCCCGCCGCAATGAACTTT
GTGTCGGACAAACGGTGGATGTGCTGATCGAACAGGAAAACCCAGCGACTGGTGAATTAATCGGGCGATCGCCCCGGTTT
GCCCCAGACGTTGACGGACTGGTATATGTCACCGGAGAAGCCTCCCTCGGCAGTATTGTCCCTGTTCAAATTACCGCTGC
GGATATTTATGACCTCTACGGCACCATCGTTGAAGCATAA

Upstream 100 bases:

>100_bases
TTCCTAAAAAATATTTCAGCATCGCCCCAAGATCCGTTACAATGCATTAAGAAATCGTTCCTAGATCTTGACCTGAACTC
CGTTCTTTACTAGAAACTGC

Downstream 100 bases:

>100_bases
CTAGACCGTTCAGCCACACCCCCGGCATTGTCCAGACTGCCAAGAAGCATCCAATCGGTTTTATTTCAAAGAACCCAGTT
TGGGAAAAGGGTTGGGGGAG

Product: tRNA modifying enzyme MiaB-like protein

Products: NA

Alternate protein names: S12 MTTase; S12 methylthiotransferase; Ribosome maturation factor RimO

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MTTKPTIAISHLGCEKNRIDSEHMIGLLVNAGYEVDANEELADYVIVNTCSFIEDARAESVRTLVELAEANKKIVISGCM
AQHFQEQLLEELPEAVALVGTGDYHKIVDVIQRTEQGEIVKEVSQEITYIADETVPRYRTTNEAVAYLRVAEGCDYRCAF
CIIPHLRGDQRSRPIESIVAEAKQLAEQGVQEIILISQITTNYGKDIYGKPKLAELLRALGGVDVPWIRIHYAYPTGLTP
EVIAAMRDTPNVIPYLDLPLQHSHPDILRAMNRPWQGRVNDRIIEDLKKALPDAILRTTFIVGFPGETEEHFQHLVDFVK
RHEFDHVGVFTFSAEEGTPAIDLPNQLPQSVKDSRRDALMEIQQPIAARRNELCVGQTVDVLIEQENPATGELIGRSPRF
APDVDGLVYVTGEASLGSIVPVQITAADIYDLYGTIVEA

Sequences:

>Translated_439_residues
MTTKPTIAISHLGCEKNRIDSEHMIGLLVNAGYEVDANEELADYVIVNTCSFIEDARAESVRTLVELAEANKKIVISGCM
AQHFQEQLLEELPEAVALVGTGDYHKIVDVIQRTEQGEIVKEVSQEITYIADETVPRYRTTNEAVAYLRVAEGCDYRCAF
CIIPHLRGDQRSRPIESIVAEAKQLAEQGVQEIILISQITTNYGKDIYGKPKLAELLRALGGVDVPWIRIHYAYPTGLTP
EVIAAMRDTPNVIPYLDLPLQHSHPDILRAMNRPWQGRVNDRIIEDLKKALPDAILRTTFIVGFPGETEEHFQHLVDFVK
RHEFDHVGVFTFSAEEGTPAIDLPNQLPQSVKDSRRDALMEIQQPIAARRNELCVGQTVDVLIEQENPATGELIGRSPRF
APDVDGLVYVTGEASLGSIVPVQITAADIYDLYGTIVEA
>Mature_438_residues
TTKPTIAISHLGCEKNRIDSEHMIGLLVNAGYEVDANEELADYVIVNTCSFIEDARAESVRTLVELAEANKKIVISGCMA
QHFQEQLLEELPEAVALVGTGDYHKIVDVIQRTEQGEIVKEVSQEITYIADETVPRYRTTNEAVAYLRVAEGCDYRCAFC
IIPHLRGDQRSRPIESIVAEAKQLAEQGVQEIILISQITTNYGKDIYGKPKLAELLRALGGVDVPWIRIHYAYPTGLTPE
VIAAMRDTPNVIPYLDLPLQHSHPDILRAMNRPWQGRVNDRIIEDLKKALPDAILRTTFIVGFPGETEEHFQHLVDFVKR
HEFDHVGVFTFSAEEGTPAIDLPNQLPQSVKDSRRDALMEIQQPIAARRNELCVGQTVDVLIEQENPATGELIGRSPRFA
PDVDGLVYVTGEASLGSIVPVQITAADIYDLYGTIVEA

Specific function: Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12

COG id: COG0621

COG function: function code J; 2-methylthioadenine synthetase

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain

Homologues:

Organism=Homo sapiens, GI28872784, Length=430, Percent_Identity=27.906976744186, Blast_Score=165, Evalue=8e-41,
Organism=Homo sapiens, GI28872782, Length=430, Percent_Identity=27.906976744186, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI93277076, Length=397, Percent_Identity=29.2191435768262, Blast_Score=160, Evalue=2e-39,
Organism=Escherichia coli, GI1787057, Length=454, Percent_Identity=38.9867841409692, Blast_Score=302, Evalue=2e-83,
Organism=Escherichia coli, GI1786882, Length=454, Percent_Identity=31.9383259911894, Blast_Score=184, Evalue=8e-48,
Organism=Caenorhabditis elegans, GI17553146, Length=416, Percent_Identity=27.6442307692308, Blast_Score=142, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI71996771, Length=362, Percent_Identity=25.1381215469613, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21356207, Length=474, Percent_Identity=27.4261603375527, Blast_Score=170, Evalue=2e-42,
Organism=Drosophila melanogaster, GI19922432, Length=450, Percent_Identity=26.2222222222222, Blast_Score=145, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMO_SYNP2 (B1XPZ7)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001733881.1
- ProteinModelPortal:   B1XPZ7
- SMR:   B1XPZ7
- GeneID:   6055633
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0619
- HOGENOM:   HBG457663
- OMA:   KADAPEI
- ProtClustDB:   CLSK893584
- GO:   GO:0005737
- HAMAP:   MF_01865
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR020612
- InterPro:   IPR013848
- InterPro:   IPR012340
- InterPro:   IPR007197
- InterPro:   IPR005840
- InterPro:   IPR002792
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR11918
- SMART:   SM00729
- TIGRFAMs:   TIGR01125
- TIGRFAMs:   TIGR00089

Pfam domain/function: PF04055 Radical_SAM; PF01938 TRAM; PF00919 UPF0004

EC number: NA

Molecular weight: Translated: 48875; Mature: 48744

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS51449 MTTASE_N; PS01278 MTTASE_RADICAL; PS50926 TRAM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKPTIAISHLGCEKNRIDSEHMIGLLVNAGYEVDANEELADYVIVNTCSFIEDARAES
CCCCCCEEEEECCCCCCCCCHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VRTLVELAEANKKIVISGCMAQHFQEQLLEELPEAVALVGTGDYHKIVDVIQRTEQGEIV
HHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHCCCCHHH
KEVSQEITYIADETVPRYRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGDQRSRPIESIVA
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHH
EAKQLAEQGVQEIILISQITTNYGKDIYGKPKLAELLRALGGVDVPWIRIHYAYPTGLTP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCH
EVIAAMRDTPNVIPYLDLPLQHSHPDILRAMNRPWQGRVNDRIIEDLKKALPDAILRTTF
HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHE
IVGFPGETEEHFQHLVDFVKRHEFDHVGVFTFSAEEGTPAIDLPNQLPQSVKDSRRDALM
EEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
EIQQPIAARRNELCVGQTVDVLIEQENPATGELIGRSPRFAPDVDGLVYVTGEASLGSIV
HHHHHHHHHCCCEECCCEEEEEEECCCCCCCHHCCCCCCCCCCCCCEEEEECCCCCCCEE
PVQITAADIYDLYGTIVEA
EEEEEHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTKPTIAISHLGCEKNRIDSEHMIGLLVNAGYEVDANEELADYVIVNTCSFIEDARAES
CCCCCEEEEECCCCCCCCCHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VRTLVELAEANKKIVISGCMAQHFQEQLLEELPEAVALVGTGDYHKIVDVIQRTEQGEIV
HHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHCCCCHHH
KEVSQEITYIADETVPRYRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGDQRSRPIESIVA
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHH
EAKQLAEQGVQEIILISQITTNYGKDIYGKPKLAELLRALGGVDVPWIRIHYAYPTGLTP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCH
EVIAAMRDTPNVIPYLDLPLQHSHPDILRAMNRPWQGRVNDRIIEDLKKALPDAILRTTF
HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHE
IVGFPGETEEHFQHLVDFVKRHEFDHVGVFTFSAEEGTPAIDLPNQLPQSVKDSRRDALM
EEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
EIQQPIAARRNELCVGQTVDVLIEQENPATGELIGRSPRFAPDVDGLVYVTGEASLGSIV
HHHHHHHHHCCCEECCCEEEEEEECCCCCCCHHCCCCCCCCCCCCCEEEEECCCCCCCEE
PVQITAADIYDLYGTIVEA
EEEEEHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA