| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077210
Identifier: 170077210
GI number: 170077210
Start: 612204
End: 613979
Strand: Reverse
Name: 170077210
Synonym: SYNPCC7002_A0585
Alternate gene names: NA
Gene position: 613979-612204 (Counterclockwise)
Preceding gene: 170077211
Following gene: 170077207
Centisome position: 20.41
GC content: 55.69
Gene sequence:
>1776_bases ATGTTCGCTTTTCGAGATTTTCTTACTTTCAGTACCGGTGGCCTTGTGGTTCTCTCTGGTGGTGGGGTGGCGATCGCCCA AACAACCCCGCCGCAAATCGCTACTCCAGAACCTTTCATCGGCCAGACCCCCCAGGCGCCATTGCCACCATTGGCCGCTC CTAGCGTTGAATCCCTCGATACAGCAGCCTTTTTACCGAGTCTCGGTGGTCTCAGCCAACCCACAACCCTGGCCGCTTTA CCTCTACCTTCCCCAGAGCTCAATTTATCCCCGACTGCCCACCTCGGCACAATTCAAGCTCCCTCGCCGCTCCTTGCCCA GGTAGATACAACGGCGACCCCCTCCCCAACAACCGCCATTGATGTGACCCTGCCCACCGCAGAGACAAACCAGACGATTC CCCTTGTGCAACCCTTACCGCCGGATCGGGTGATTAATGAAGATCTAAATCAGCTCCTAGAGCCCATCGATAATCCGGCA GTGACAGTCCCCCAGGAGGCCACGGCGGTGACGACTGACAATGTTGTTGACCTCACCCTAGAAGAAACGATTCGTCTGGC CCTAGAGCGCAATGAAACGCTCCAGGAAGCCCGTCTGAACTACGACCGATCAGAGGAACTGGTGCGAGAGGCGATCGCCG CCGAATACCCAAATCTCAGCAACCAGGTTGACATTACCCGCACCGATAGCGCCAACGGAGAACTCCAGGCCCGACGGCTG GGGGGAGACAACAATGCCACCACAGCGATCAATGGTCGTCTCGAAGTCAGCTATGACATCTATACCGGGGGGCGTCGCTC TGCCCAAATTGAAGCAGCCCAGACCCAATTGCAAATTGCTGAACTAGACATCGAGCGCCTCACCGAAGAAACTCGTCTAG CCGCTGCGGTGAACTATTACAATCTCCAGAGTGCCGACGCCCAGGTGGTTATCGAGCAAAGTTCGGTGTTTGATGCCACC CAGAGTTTACGGGATGCCACCCTACTAGAACAGGCAGGCTTGGGCACAAAATTTGATGTGTTGCGGGCCGAGGTCGAACT CGCTAGTGCCCAACAGCGGCTCACCAGGGCTGAAGCCACCCAAAGAACCGCCCGGCGTCAACTGGCTCAACTGCTGAGTT TGGAACCGACCATCGATCCCCGCACCGCCGATGAGATTAACCTCGCTGGAAGATGGGAAATTTCTTTAGAAGAAACCATT GTCCTGGCATTGCAAAACCGCCAAGAATTGCGCCAGCAGCTCCTCCAGCGGGAAGTTGATGGTTACCAGGAACGGATTGC ATTGGCTGCCGTTCGACCTTTAGTCAGCGTTTTTGCGAATTATGATGTCTTGGAAGTGTTTGATGATAGCCTTGGCCCCG CCGATGGGTTAACGGTTGGGGCCCGGATGCGTTGGAATTTCTTTGATGGGGGTGCAGCGGCCGCCCGGGCAAATCAAGAG CAAGTTGATCAGGCGATCGCCGAAAATCGTTTTGCTAACCAAAGAAACCAAATTCGCCTGGCGGTGGAAACGGCCTACTA TGACTTTGAAGCCAGCGAACAAAACATCACGACGGCAGCCGCCGCAGTCACTTTAGCAGAAGAAAGTTTACGCCTGGCTC GTCTGCGCTTTAATGCAGGGGTCGGCACCCAAACCGATGTAATCTCTGCCCAAACGGGTCTGAATACGGCCCGGGGGAAC TATCTTCAGGCAGTCACCGATTACAATCGTGCCTTTGCCCAACTGAAACGGGAAGTCGGTTTAGGGGATGCGGTGATTGC CCCGGCGGCTCCCTAG
Upstream 100 bases:
>100_bases TAAACTAAGTCATTAGCTCCTAGGCCGCGCAATTTTTCCCGTTGCCAAGCTCGCTAGTGGGCAATTTTTAAACTATTTTC AGCTGGACCCTTAGAAGCTA
Downstream 100 bases:
>100_bases GGATTATTGAGCGATCGCCTTGGTTTGCAGCCAGGTTTCAACTGCCGTGGCGATCGCCCCGGCGAGTTCTTCCTGGGCCT GGGGATCGGTAATCCACTCA
Product: Outer membrane efflux protein
Products: NA
Alternate protein names: RND Family Outer Membrane Efflux Protein; Tranporter Outer Membrane Factor Family; Outer Membrane Efflux Family Protein
Number of amino acids: Translated: 591; Mature: 591
Protein sequence:
>591_residues MFAFRDFLTFSTGGLVVLSGGGVAIAQTTPPQIATPEPFIGQTPQAPLPPLAAPSVESLDTAAFLPSLGGLSQPTTLAAL PLPSPELNLSPTAHLGTIQAPSPLLAQVDTTATPSPTTAIDVTLPTAETNQTIPLVQPLPPDRVINEDLNQLLEPIDNPA VTVPQEATAVTTDNVVDLTLEETIRLALERNETLQEARLNYDRSEELVREAIAAEYPNLSNQVDITRTDSANGELQARRL GGDNNATTAINGRLEVSYDIYTGGRRSAQIEAAQTQLQIAELDIERLTEETRLAAAVNYYNLQSADAQVVIEQSSVFDAT QSLRDATLLEQAGLGTKFDVLRAEVELASAQQRLTRAEATQRTARRQLAQLLSLEPTIDPRTADEINLAGRWEISLEETI VLALQNRQELRQQLLQREVDGYQERIALAAVRPLVSVFANYDVLEVFDDSLGPADGLTVGARMRWNFFDGGAAAARANQE QVDQAIAENRFANQRNQIRLAVETAYYDFEASEQNITTAAAAVTLAEESLRLARLRFNAGVGTQTDVISAQTGLNTARGN YLQAVTDYNRAFAQLKREVGLGDAVIAPAAP
Sequences:
>Translated_591_residues MFAFRDFLTFSTGGLVVLSGGGVAIAQTTPPQIATPEPFIGQTPQAPLPPLAAPSVESLDTAAFLPSLGGLSQPTTLAAL PLPSPELNLSPTAHLGTIQAPSPLLAQVDTTATPSPTTAIDVTLPTAETNQTIPLVQPLPPDRVINEDLNQLLEPIDNPA VTVPQEATAVTTDNVVDLTLEETIRLALERNETLQEARLNYDRSEELVREAIAAEYPNLSNQVDITRTDSANGELQARRL GGDNNATTAINGRLEVSYDIYTGGRRSAQIEAAQTQLQIAELDIERLTEETRLAAAVNYYNLQSADAQVVIEQSSVFDAT QSLRDATLLEQAGLGTKFDVLRAEVELASAQQRLTRAEATQRTARRQLAQLLSLEPTIDPRTADEINLAGRWEISLEETI VLALQNRQELRQQLLQREVDGYQERIALAAVRPLVSVFANYDVLEVFDDSLGPADGLTVGARMRWNFFDGGAAAARANQE QVDQAIAENRFANQRNQIRLAVETAYYDFEASEQNITTAAAAVTLAEESLRLARLRFNAGVGTQTDVISAQTGLNTARGN YLQAVTDYNRAFAQLKREVGLGDAVIAPAAP >Mature_591_residues MFAFRDFLTFSTGGLVVLSGGGVAIAQTTPPQIATPEPFIGQTPQAPLPPLAAPSVESLDTAAFLPSLGGLSQPTTLAAL PLPSPELNLSPTAHLGTIQAPSPLLAQVDTTATPSPTTAIDVTLPTAETNQTIPLVQPLPPDRVINEDLNQLLEPIDNPA VTVPQEATAVTTDNVVDLTLEETIRLALERNETLQEARLNYDRSEELVREAIAAEYPNLSNQVDITRTDSANGELQARRL GGDNNATTAINGRLEVSYDIYTGGRRSAQIEAAQTQLQIAELDIERLTEETRLAAAVNYYNLQSADAQVVIEQSSVFDAT QSLRDATLLEQAGLGTKFDVLRAEVELASAQQRLTRAEATQRTARRQLAQLLSLEPTIDPRTADEINLAGRWEISLEETI VLALQNRQELRQQLLQREVDGYQERIALAAVRPLVSVFANYDVLEVFDDSLGPADGLTVGARMRWNFFDGGAAAARANQE QVDQAIAENRFANQRNQIRLAVETAYYDFEASEQNITTAAAAVTLAEESLRLARLRFNAGVGTQTDVISAQTGLNTARGN YLQAVTDYNRAFAQLKREVGLGDAVIAPAAP
Specific function: Unknown
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63855; Mature: 63855
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFAFRDFLTFSTGGLVVLSGGGVAIAQTTPPQIATPEPFIGQTPQAPLPPLAAPSVESLD CCCHHHHHEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH TAAFLPSLGGLSQPTTLAALPLPSPELNLSPTAHLGTIQAPSPLLAQVDTTATPSPTTAI HHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCEEE DVTLPTAETNQTIPLVQPLPPDRVINEDLNQLLEPIDNPAVTVPQEATAVTTDNVVDLTL EEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCEEECCCEEEEEH EETIRLALERNETLQEARLNYDRSEELVREAIAAEYPNLSNQVDITRTDSANGELQARRL HHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEC GGDNNATTAINGRLEVSYDIYTGGRRSAQIEAAQTQLQIAELDIERLTEETRLAAAVNYY CCCCCCEEEECCEEEEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE NLQSADAQVVIEQSSVFDATQSLRDATLLEQAGLGTKFDVLRAEVELASAQQRLTRAEAT ECCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH QRTARRQLAQLLSLEPTIDPRTADEINLAGRWEISLEETIVLALQNRQELRQQLLQREVD HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHEEEEEHHCHHHHHHHHHHHHHH GYQERIALAAVRPLVSVFANYDVLEVFDDSLGPADGLTVGARMRWNFFDGGAAAARANQE HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEECCEEEEEEECCCHHHHCCCHH QVDQAIAENRFANQRNQIRLAVETAYYDFEASEQNITTAAAAVTLAEESLRLARLRFNAG HHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHEEEEEECCC VGTQTDVISAQTGLNTARGNYLQAVTDYNRAFAQLKREVGLGDAVIAPAAP CCCCCCEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC >Mature Secondary Structure MFAFRDFLTFSTGGLVVLSGGGVAIAQTTPPQIATPEPFIGQTPQAPLPPLAAPSVESLD CCCHHHHHEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH TAAFLPSLGGLSQPTTLAALPLPSPELNLSPTAHLGTIQAPSPLLAQVDTTATPSPTTAI HHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCEEE DVTLPTAETNQTIPLVQPLPPDRVINEDLNQLLEPIDNPAVTVPQEATAVTTDNVVDLTL EEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCEEECCCEEEEEH EETIRLALERNETLQEARLNYDRSEELVREAIAAEYPNLSNQVDITRTDSANGELQARRL HHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEC GGDNNATTAINGRLEVSYDIYTGGRRSAQIEAAQTQLQIAELDIERLTEETRLAAAVNYY CCCCCCEEEECCEEEEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE NLQSADAQVVIEQSSVFDATQSLRDATLLEQAGLGTKFDVLRAEVELASAQQRLTRAEAT ECCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH QRTARRQLAQLLSLEPTIDPRTADEINLAGRWEISLEETIVLALQNRQELRQQLLQREVD HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHEEEEEHHCHHHHHHHHHHHHHH GYQERIALAAVRPLVSVFANYDVLEVFDDSLGPADGLTVGARMRWNFFDGGAAAARANQE HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEECCEEEEEEECCCHHHHCCCHH QVDQAIAENRFANQRNQIRLAVETAYYDFEASEQNITTAAAAVTLAEESLRLARLRFNAG HHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHEEEEEECCC VGTQTDVISAQTGLNTARGNYLQAVTDYNRAFAQLKREVGLGDAVIAPAAP CCCCCCEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA