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The map label for this gene is sdsA [H]

Identifier: 170077205

GI number: 170077205

Start: 606122

End: 607093

Strand: Direct

Name: sdsA [H]

Synonym: SYNPCC7002_A0580

Alternate gene names: 170077205

Gene position: 606122-607093 (Clockwise)

Preceding gene: 170077204

Following gene: 170077206

Centisome position: 20.15

GC content: 54.22

Gene sequence:

>972_bases
ATGATTTCAGCGACTACCCTTTTTTCTCCCGTCGAAGCCGACCTCAAGGAGCTCAGTGAAAATCTGACGCGGCTAATTAG
CGCCCGACATCCGATTTTGGGGGCCGCGGCAGAGCATCTGTTTTCTGCGGGGGGGAAACGAGTTCGACCCGCCATTGTGC
TTTTGGCCTCCCGGGCAACCCTAGGCGATCGCCCCTTGACCCAGCGGCACCGTCGCCTGGCAGAAATCACCGAAATGATT
CACACGGCGAGCCTTGTCCACGACGATGTGGTTGATGAAGCGGCCCTGCGCCGGAGTGTGCCCACCGTGAACAGTCTCTT
TGACAATCGCATCGCGGTTTTGGCCGGAGACTTTCTCTTTGCCCAGTCCTCGTGGTATCTCGCGAATTTAGATAATCTCA
CCGTGGTGAAATTGCTCTCTGAGGTGATCAAAGACTTCGCCGAAGGGGAAATTCAACAGGGGCTGAACCGCTTCGACACC
GGAATGAACCTCGAAATTTACATCGAAAAATCCTATTACAAAACAGCGTCATTGATTGGCAATAGTGCCAAAGCGGCGGC
TGTTCTCAGTGAGGTTGACCCAGAAATTGGCGATCGCCTCTACGACTATGGCCGCAATTTAGGCTTGGCCTTCCAAATTG
TCGATGACATTCTCGACTTCACCGGCTCTACTGATGTTCTGGGGAAACCCGCCGGATCCGATCTGATCGGCGGCCACATT
ACCGCCCCAGCCCTGTTTGCCATGGAAGAGCATCCCAACCTGACCCAACTGATCGAGCGGGAATTTGCCGAAAACGGCGA
CCCCGAAAAAGCCCTCGAAATTGTGCGCAACAGTAATGGGATCAGTCGCGCTAAAGAACTTGCGGCCCATCACGGTCAAT
TGGCTCGCCACAGTTTAGAGTGCCTAGATCCGTCTCCCTCCAAAGATGCCCTCACGGATCTCATTGACTACGTTTTGGGC
CGGATGTATTAG

Upstream 100 bases:

>100_bases
TAGACCCGCAAAAAAGAGCCGTTTTCTGCTGAAACGAATCCATTGCCATACAATATAGAATATGTAAATTTTCGTAAATT
TCGTTTCCCTCGGCTTAATA

Downstream 100 bases:

>100_bases
GCCGCACCCTGAAGTAAAAAAGCAACCTGAAACAAGGCGACATCCAGTTGCAATGATTGACCATGGCACGACAGCGTAAA
AAAGCCGATCTCCCGACAAA

Product: solanesyl diphosphate synthase

Products: trans-polyisoprenyln-PP; pyrophosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MISATTLFSPVEADLKELSENLTRLISARHPILGAAAEHLFSAGGKRVRPAIVLLASRATLGDRPLTQRHRRLAEITEMI
HTASLVHDDVVDEAALRRSVPTVNSLFDNRIAVLAGDFLFAQSSWYLANLDNLTVVKLLSEVIKDFAEGEIQQGLNRFDT
GMNLEIYIEKSYYKTASLIGNSAKAAAVLSEVDPEIGDRLYDYGRNLGLAFQIVDDILDFTGSTDVLGKPAGSDLIGGHI
TAPALFAMEEHPNLTQLIEREFAENGDPEKALEIVRNSNGISRAKELAAHHGQLARHSLECLDPSPSKDALTDLIDYVLG
RMY

Sequences:

>Translated_323_residues
MISATTLFSPVEADLKELSENLTRLISARHPILGAAAEHLFSAGGKRVRPAIVLLASRATLGDRPLTQRHRRLAEITEMI
HTASLVHDDVVDEAALRRSVPTVNSLFDNRIAVLAGDFLFAQSSWYLANLDNLTVVKLLSEVIKDFAEGEIQQGLNRFDT
GMNLEIYIEKSYYKTASLIGNSAKAAAVLSEVDPEIGDRLYDYGRNLGLAFQIVDDILDFTGSTDVLGKPAGSDLIGGHI
TAPALFAMEEHPNLTQLIEREFAENGDPEKALEIVRNSNGISRAKELAAHHGQLARHSLECLDPSPSKDALTDLIDYVLG
RMY
>Mature_323_residues
MISATTLFSPVEADLKELSENLTRLISARHPILGAAAEHLFSAGGKRVRPAIVLLASRATLGDRPLTQRHRRLAEITEMI
HTASLVHDDVVDEAALRRSVPTVNSLFDNRIAVLAGDFLFAQSSWYLANLDNLTVVKLLSEVIKDFAEGEIQQGLNRFDT
GMNLEIYIEKSYYKTASLIGNSAKAAAVLSEVDPEIGDRLYDYGRNLGLAFQIVDDILDFTGSTDVLGKPAGSDLIGGHI
TAPALFAMEEHPNLTQLIEREFAENGDPEKALEIVRNSNGISRAKELAAHHGQLARHSLECLDPSPSKDALTDLIDYVLG
RMY

Specific function: Possible role in synthesis of the nonaprenyl side chain of plastoquinone or in synthesis of other prenyl chains such as undekaprenyl pyrophosphate [H]

COG id: COG0142

COG function: function code H; Geranylgeranyl pyrophosphate synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FPP/GGPP synthase family [H]

Homologues:

Organism=Homo sapiens, GI50659086, Length=312, Percent_Identity=40.7051282051282, Blast_Score=229, Evalue=2e-60,
Organism=Homo sapiens, GI169808399, Length=325, Percent_Identity=26.7692307692308, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI4758430, Length=204, Percent_Identity=27.9411764705882, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI83700220, Length=204, Percent_Identity=27.9411764705882, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1789578, Length=288, Percent_Identity=36.4583333333333, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1786623, Length=266, Percent_Identity=30.4511278195489, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17505681, Length=291, Percent_Identity=36.7697594501718, Blast_Score=198, Evalue=3e-51,
Organism=Saccharomyces cerevisiae, GI6319475, Length=303, Percent_Identity=41.9141914191419, Blast_Score=208, Evalue=7e-55,
Organism=Drosophila melanogaster, GI24651612, Length=316, Percent_Identity=37.6582278481013, Blast_Score=225, Evalue=3e-59,
Organism=Drosophila melanogaster, GI21356309, Length=351, Percent_Identity=26.2108262108262, Blast_Score=97, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000092
- InterPro:   IPR017446
- InterPro:   IPR014120
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00348 polyprenyl_synt [H]

EC number: 2.5.1.- [C]

Molecular weight: Translated: 35360; Mature: 35360

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00444 POLYPRENYL_SYNTHET_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISATTLFSPVEADLKELSENLTRLISARHPILGAAAEHLFSAGGKRVRPAIVLLASRAT
CCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHEEECCCC
LGDRPLTQRHRRLAEITEMIHTASLVHDDVVDEAALRRSVPTVNSLFDNRIAVLAGDFLF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
AQSSWYLANLDNLTVVKLLSEVIKDFAEGEIQQGLNRFDTGMNLEIYIEKSYYKTASLIG
HCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHC
NSAKAAAVLSEVDPEIGDRLYDYGRNLGLAFQIVDDILDFTGSTDVLGKPAGSDLIGGHI
CCHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
TAPALFAMEEHPNLTQLIEREFAENGDPEKALEIVRNSNGISRAKELAAHHGQLARHSLE
HHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
CLDPSPSKDALTDLIDYVLGRMY
HCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MISATTLFSPVEADLKELSENLTRLISARHPILGAAAEHLFSAGGKRVRPAIVLLASRAT
CCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHEEECCCC
LGDRPLTQRHRRLAEITEMIHTASLVHDDVVDEAALRRSVPTVNSLFDNRIAVLAGDFLF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
AQSSWYLANLDNLTVVKLLSEVIKDFAEGEIQQGLNRFDTGMNLEIYIEKSYYKTASLIG
HCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHC
NSAKAAAVLSEVDPEIGDRLYDYGRNLGLAFQIVDDILDFTGSTDVLGKPAGSDLIGGHI
CCHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
TAPALFAMEEHPNLTQLIEREFAENGDPEKALEIVRNSNGISRAKELAAHHGQLARHSLE
HHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
CLDPSPSKDALTDLIDYVLGRMY
HCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: trans-polyisoprenyln-PP; Delta3-isopentenyl-PP [C]

Specific reaction: trans-polyisoprenyln-PP + Delta3-isopentenyl-PP = trans-polyisoprenyln-PP + pyrophosphate [C]

General reaction: Transferring alkyl or aryl groups, other than methyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]