| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is gspD [H]
Identifier: 170077129
GI number: 170077129
Start: 532840
End: 535206
Strand: Direct
Name: gspD [H]
Synonym: SYNPCC7002_A0504
Alternate gene names: 170077129
Gene position: 532840-535206 (Clockwise)
Preceding gene: 170077128
Following gene: 170077130
Centisome position: 17.71
GC content: 45.29
Gene sequence:
>2367_bases GTGAATATCAAGTCCTATTCCGGAGTCGTCGCTGGTGTCGTTGCTTCTACAACAGTTTTAGTTACCCCAGCCCAGGCAGC AAATATACAAGTACGGGAACTGGCGGTACGGCCAGGGGATGGCAACCTAGAGCTCGCTCTCAGTCTTGCGCCAGAGAGTG CAAATCTGTCTGGTGAGAAGCCCCAGGTTTCGACGACCCAAAAAGACCGGGTACTCATCGCAGAAATTGCCAATGCACGG CTAGATCTCGGTAATGGACAGGATATTTTCAGCCAAGATAATCCTTTACCTGGGATTGAGCGCATCGAGGTGATGGAGTC GGCTCCAGGCAATGTCAAAATCGTCGCCTTAGGGGAAGTGGCAGCACCAAAAGGGGAAATCCTCAGCCAGGATAACAACA GCATTTTGCTCAATGTGACCACCTCGACAGCAGACACGACAGAAACGGCCCAGGTCACAGAGCCCTCCACAGTCATTGAA CCGACCTTGTTGGCCCAGAGTGCCCCCAGCAATAACAATCAAAATAATTTTCTCCAACCGACGGCCCCTATCCCACCGTT TTTACCGAGGGCCAGTGCGCCACCAGTGGGGGATATTGCGGTTTCGACAATTGATACGACCCTGCCTAGCTATGTGAATC TACAAACAAATGCGGTTGTCCCCCGTCTCGTACTGAAGGAAGCTCCCATTGAGGATGTGATGTCTCTGTTGGCCCGCGCT TCCGGTCTCAATATTGTTGTGGGCAATGATGTAAAAGCACCTGCCGGGGAAGGTGAAGCGCCACCTGTCACTGTCTCTTT AGATATGCAAAATGCGCCTGTGCAAGATGTCTTTAACTACGTCTTAATGCTTGGTGACCTCAATGCTGTGAGAAATGGCA ACACAATTTTTGTCGGGAGAAATCTGCCCTTTGCGATCGCCCCCAGGATTACCCGCAGCTTCCGGTTGAATCAGGCCACT CCCGAAGAAGCTCGTTGTTTCTTGATTACTGGTGATTCTACAGTTTCTGAAACAATTAACGAAGAAAGAACGGTAGAAAC AGCAGAATCAGCTTTTTCATTAAGTGAGGAAAGTGGCGATGTCCCAACATCTCGGACTCAAAGCACATCGGTAAGTAGAG AAGTGACAAGAACTTGCTCCAAGACCCCAACAGAGGAGGAGCTTGCCCGTGGTTTACTATCCCGATTTAGTAGTTTAGAT ATCCTGACTGATGCACGACTAAAAACAATTACTTTGGGTGGCGATCCCAAAACTATTGAAATTGCCAGTAATTTTCTTAA GCAGTTAGATGCTCGTCAGCGGCAAGTGGCAGTAAATGTCAAAATTATCGACGTAACGCTGACTGGAAATCGTTCTATTT CCTCTGATATTAAGCTCTTACTTGAAGATCGTGTCGGAATTAGTGCAGGAGACGGAATTATTCTTTCTCCAAATGATTTA GCAAGAACTTCTGAATTTTTCTCTGAATTTAATCCGGATTCCATCACAGTAGAGAGAGGAGGCGCAAACATTAATCTAGG TCAAGTAATTGATTCTTTTGATGGTCCACCAGGAACTACTAGAATTGAGCAAGATGGAGATGAGCTTATTGCAATAGGGC AAAGATTAGTCCAAGTAGGAGTGGGTCCGAATAACACACCAATTTTAGATTTAGTACCTTTTGAAGAAGGAATTGGAACG ATCGTACCCTCTACAACTTCAGGGACTAACTTTATTGGCAGCCTTGTCGCTGGTCTTTTGAGAAATACAACATCCAAAAT TGTCGCTGATCCAACCTTAATTATCCAAGAGAATGAAACAGGAGAACTAAGGGTTACAGAACAGATTATTAACAGTGTTC AAATTGTGTCAGGCAGTGTGAATTCCGATAGCGATAATGGAACCAATAACGCCGTTAATGTCTTACCTGAACCAGTTCTA GCTGAGGTTGGTCTTTTTGTTCCAATCACTGTGGAAAACATAGATGATAATGGTTTTATAACTCTTAATATTACCCCTGA GGTGTCAGCGCCTAGTGAAGAAGTTGTCTTTGAAGCTGGTACAAGTAGAAATGTCTTAACACTAAAACGTCAGAGTATTC TGAATTCTGGTTCTGTGCGGCTTAGAGACGACCAAACGCTTATTTTAGCTGGGGCGATTGATGAACGAGATATTACCACC ACAAGTAAAGTCCCAATCTTAGGTGATATTCCTATTCTCGGATCCTTGTTTAGAAGCAGTTCTAGAACAAATGAGCGTCG TGAACTACTTTTTATCATCACGCCTCAGGTTATTGATGATTCTCAGAATGCGATGTGGGGTTACGGCTATCAACCTAGCG AAACCGCCCGTGAAATGCTAGACAATGCTCGTTTCCCAACCCGTTAA
Upstream 100 bases:
>100_bases GGATTTTTAGGGTTGTTTTTTAAAATTATTGTTAATTTCAAGCGGGATTCATTTCGGTTTTTCGATTACATTTAATTAGT GTGTGTGGAGATTTTCTGTC
Downstream 100 bases:
>100_bases CCATCCGTAGGGGCTTGGTTCCCATGCCCTTAGTTTCTATTATTTTGGATTTGGAAACCAAACCCCTACGGTTATTGCGA TGGCAAATCAATATAATCCG
Product: general secretion pathway protein D
Products: NA
Alternate protein names: Cholera toxin secretion protein epsD [H]
Number of amino acids: Translated: 788; Mature: 788
Protein sequence:
>788_residues MNIKSYSGVVAGVVASTTVLVTPAQAANIQVRELAVRPGDGNLELALSLAPESANLSGEKPQVSTTQKDRVLIAEIANAR LDLGNGQDIFSQDNPLPGIERIEVMESAPGNVKIVALGEVAAPKGEILSQDNNSILLNVTTSTADTTETAQVTEPSTVIE PTLLAQSAPSNNNQNNFLQPTAPIPPFLPRASAPPVGDIAVSTIDTTLPSYVNLQTNAVVPRLVLKEAPIEDVMSLLARA SGLNIVVGNDVKAPAGEGEAPPVTVSLDMQNAPVQDVFNYVLMLGDLNAVRNGNTIFVGRNLPFAIAPRITRSFRLNQAT PEEARCFLITGDSTVSETINEERTVETAESAFSLSEESGDVPTSRTQSTSVSREVTRTCSKTPTEEELARGLLSRFSSLD ILTDARLKTITLGGDPKTIEIASNFLKQLDARQRQVAVNVKIIDVTLTGNRSISSDIKLLLEDRVGISAGDGIILSPNDL ARTSEFFSEFNPDSITVERGGANINLGQVIDSFDGPPGTTRIEQDGDELIAIGQRLVQVGVGPNNTPILDLVPFEEGIGT IVPSTTSGTNFIGSLVAGLLRNTTSKIVADPTLIIQENETGELRVTEQIINSVQIVSGSVNSDSDNGTNNAVNVLPEPVL AEVGLFVPITVENIDDNGFITLNITPEVSAPSEEVVFEAGTSRNVLTLKRQSILNSGSVRLRDDQTLILAGAIDERDITT TSKVPILGDIPILGSLFRSSSRTNERRELLFIITPQVIDDSQNAMWGYGYQPSETAREMLDNARFPTR
Sequences:
>Translated_788_residues MNIKSYSGVVAGVVASTTVLVTPAQAANIQVRELAVRPGDGNLELALSLAPESANLSGEKPQVSTTQKDRVLIAEIANAR LDLGNGQDIFSQDNPLPGIERIEVMESAPGNVKIVALGEVAAPKGEILSQDNNSILLNVTTSTADTTETAQVTEPSTVIE PTLLAQSAPSNNNQNNFLQPTAPIPPFLPRASAPPVGDIAVSTIDTTLPSYVNLQTNAVVPRLVLKEAPIEDVMSLLARA SGLNIVVGNDVKAPAGEGEAPPVTVSLDMQNAPVQDVFNYVLMLGDLNAVRNGNTIFVGRNLPFAIAPRITRSFRLNQAT PEEARCFLITGDSTVSETINEERTVETAESAFSLSEESGDVPTSRTQSTSVSREVTRTCSKTPTEEELARGLLSRFSSLD ILTDARLKTITLGGDPKTIEIASNFLKQLDARQRQVAVNVKIIDVTLTGNRSISSDIKLLLEDRVGISAGDGIILSPNDL ARTSEFFSEFNPDSITVERGGANINLGQVIDSFDGPPGTTRIEQDGDELIAIGQRLVQVGVGPNNTPILDLVPFEEGIGT IVPSTTSGTNFIGSLVAGLLRNTTSKIVADPTLIIQENETGELRVTEQIINSVQIVSGSVNSDSDNGTNNAVNVLPEPVL AEVGLFVPITVENIDDNGFITLNITPEVSAPSEEVVFEAGTSRNVLTLKRQSILNSGSVRLRDDQTLILAGAIDERDITT TSKVPILGDIPILGSLFRSSSRTNERRELLFIITPQVIDDSQNAMWGYGYQPSETAREMLDNARFPTR >Mature_788_residues MNIKSYSGVVAGVVASTTVLVTPAQAANIQVRELAVRPGDGNLELALSLAPESANLSGEKPQVSTTQKDRVLIAEIANAR LDLGNGQDIFSQDNPLPGIERIEVMESAPGNVKIVALGEVAAPKGEILSQDNNSILLNVTTSTADTTETAQVTEPSTVIE PTLLAQSAPSNNNQNNFLQPTAPIPPFLPRASAPPVGDIAVSTIDTTLPSYVNLQTNAVVPRLVLKEAPIEDVMSLLARA SGLNIVVGNDVKAPAGEGEAPPVTVSLDMQNAPVQDVFNYVLMLGDLNAVRNGNTIFVGRNLPFAIAPRITRSFRLNQAT PEEARCFLITGDSTVSETINEERTVETAESAFSLSEESGDVPTSRTQSTSVSREVTRTCSKTPTEEELARGLLSRFSSLD ILTDARLKTITLGGDPKTIEIASNFLKQLDARQRQVAVNVKIIDVTLTGNRSISSDIKLLLEDRVGISAGDGIILSPNDL ARTSEFFSEFNPDSITVERGGANINLGQVIDSFDGPPGTTRIEQDGDELIAIGQRLVQVGVGPNNTPILDLVPFEEGIGT IVPSTTSGTNFIGSLVAGLLRNTTSKIVADPTLIIQENETGELRVTEQIINSVQIVSGSVNSDSDNGTNNAVNVLPEPVL AEVGLFVPITVENIDDNGFITLNITPEVSAPSEEVVFEAGTSRNVLTLKRQSILNSGSVRLRDDQTLILAGAIDERDITT TSKVPILGDIPILGSLFRSSSRTNERRELLFIITPQVIDDSQNAMWGYGYQPSETAREMLDNARFPTR
Specific function: Required for secretion of cholera toxin through the outer membrane [H]
COG id: COG4796
COG function: function code U; Type II secretory pathway, component HofQ
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI87082242, Length=188, Percent_Identity=27.6595744680851, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR004846 - InterPro: IPR013356 - InterPro: IPR004845 - InterPro: IPR001814 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]
EC number: NA
Molecular weight: Translated: 84066; Mature: 84066
Theoretical pI: Translated: 4.19; Mature: 4.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIKSYSGVVAGVVASTTVLVTPAQAANIQVRELAVRPGDGNLELALSLAPESANLSGEK CCCCCCCCHHHHHHHCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCC PQVSTTQKDRVLIAEIANARLDLGNGQDIFSQDNPLPGIERIEVMESAPGNVKIVALGEV CCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCC AAPKGEILSQDNNSILLNVTTSTADTTETAQVTEPSTVIEPTLLAQSAPSNNNQNNFLQP CCCCCHHCCCCCCEEEEEEECCCCCCCCCEECCCCCHHCCHHHHCCCCCCCCCCCCEECC TAPIPPFLPRASAPPVGDIAVSTIDTTLPSYVNLQTNAVVPRLVLKEAPIEDVMSLLARA CCCCCCCCCCCCCCCCCCEEEEEHHHCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHC SGLNIVVGNDVKAPAGEGEAPPVTVSLDMQNAPVQDVFNYVLMLGDLNAVRNGNTIFVGR CCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHCCCCEEEEEC NLPFAIAPRITRSFRLNQATPEEARCFLITGDSTVSETINEERTVETAESAFSLSEESGD CCCEEECCCHHHEEECCCCCCCCCEEEEEECCCHHHHHHCHHHHHHHHHHHHHCCCCCCC VPTSRTQSTSVSREVTRTCSKTPTEEELARGLLSRFSSLDILTDARLKTITLGGDPKTIE CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCHH IASNFLKQLDARQRQVAVNVKIIDVTLTGNRSISSDIKLLLEDRVGISAGDGIILSPNDL HHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCHH ARTSEFFSEFNPDSITVERGGANINLGQVIDSFDGPPGTTRIEQDGDELIAIGQRLVQVG HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHEEC VGPNNTPILDLVPFEEGIGTIVPSTTSGTNFIGSLVAGLLRNTTSKIVADPTLIIQENET CCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHEEECCEEEEEECCC GELRVTEQIINSVQIVSGSVNSDSDNGTNNAVNVLPEPVLAEVGLFVPITVENIDDNGFI CCEEEHHHHHCCEEEEECCCCCCCCCCCCCEEECCCCHHHHHCCEEEEEEEEECCCCCEE TLNITPEVSAPSEEVVFEAGTSRNVLTLKRQSILNSGSVRLRDDQTLILAGAIDERDITT EEEECCCCCCCCHHEEEECCCCCCEEEEEHHHHHCCCCEEEECCCEEEEEECCCCCCCCC TSKVPILGDIPILGSLFRSSSRTNERRELLFIITPQVIDDSQNAMWGYGYQPSETAREML CCCCCEEECCHHHHHHHHCCCCCCCCEEEEEEECCCEECCCCCCEEECCCCCHHHHHHHH DNARFPTR HCCCCCCC >Mature Secondary Structure MNIKSYSGVVAGVVASTTVLVTPAQAANIQVRELAVRPGDGNLELALSLAPESANLSGEK CCCCCCCCHHHHHHHCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCC PQVSTTQKDRVLIAEIANARLDLGNGQDIFSQDNPLPGIERIEVMESAPGNVKIVALGEV CCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCC AAPKGEILSQDNNSILLNVTTSTADTTETAQVTEPSTVIEPTLLAQSAPSNNNQNNFLQP CCCCCHHCCCCCCEEEEEEECCCCCCCCCEECCCCCHHCCHHHHCCCCCCCCCCCCEECC TAPIPPFLPRASAPPVGDIAVSTIDTTLPSYVNLQTNAVVPRLVLKEAPIEDVMSLLARA CCCCCCCCCCCCCCCCCCEEEEEHHHCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHC SGLNIVVGNDVKAPAGEGEAPPVTVSLDMQNAPVQDVFNYVLMLGDLNAVRNGNTIFVGR CCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHCCCCEEEEEC NLPFAIAPRITRSFRLNQATPEEARCFLITGDSTVSETINEERTVETAESAFSLSEESGD CCCEEECCCHHHEEECCCCCCCCCEEEEEECCCHHHHHHCHHHHHHHHHHHHHCCCCCCC VPTSRTQSTSVSREVTRTCSKTPTEEELARGLLSRFSSLDILTDARLKTITLGGDPKTIE CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCHH IASNFLKQLDARQRQVAVNVKIIDVTLTGNRSISSDIKLLLEDRVGISAGDGIILSPNDL HHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCHH ARTSEFFSEFNPDSITVERGGANINLGQVIDSFDGPPGTTRIEQDGDELIAIGQRLVQVG HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHEEC VGPNNTPILDLVPFEEGIGTIVPSTTSGTNFIGSLVAGLLRNTTSKIVADPTLIIQENET CCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHEEECCEEEEEECCC GELRVTEQIINSVQIVSGSVNSDSDNGTNNAVNVLPEPVLAEVGLFVPITVENIDDNGFI CCEEEHHHHHCCEEEEECCCCCCCCCCCCCEEECCCCHHHHHCCEEEEEEEEECCCCCEE TLNITPEVSAPSEEVVFEAGTSRNVLTLKRQSILNSGSVRLRDDQTLILAGAIDERDITT EEEECCCCCCCCHHEEEECCCCCCEEEEEHHHHHCCCCEEEECCCEEEEEECCCCCCCCC TSKVPILGDIPILGSLFRSSSRTNERRELLFIITPQVIDDSQNAMWGYGYQPSETAREML CCCCCEEECCHHHHHHHHCCCCCCCCEEEEEEECCCEECCCCCCEEECCCCCHHHHHHHH DNARFPTR HCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]