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The map label for this gene is yjfH [C]

Identifier: 170077013

GI number: 170077013

Start: 408922

End: 410088

Strand: Direct

Name: yjfH [C]

Synonym: SYNPCC7002_A0385

Alternate gene names: 170077013

Gene position: 408922-410088 (Clockwise)

Preceding gene: 170077012

Following gene: 170077014

Centisome position: 13.59

GC content: 54.33

Gene sequence:

>1167_bases
ATGAACAAGCCACATCGATCCGATTCGGGTAAAAAATACGGTAGAGCTGCTGGGGGAAGAGACCGCAAGCCGAGCAAAAA
GTATGGAAAAGCTTCTTCCTTTGATCGGGATCGACGTTCTGATCGCCGCGAAGATGGCGGTAAATTTGAACGGGGCGATC
GCCCAGCCCCCCGTCGCAAGGGTCAATTTTCCCGACGAGACGAAGGAGGAGAGCGCTCCTTTAAACGTTTTGATAAACGC
AGCAGCCAAGGTGCGGGCCCGAATAAAAGACGCCCCATTACAGACCGTCCCAAGCCCCAGCGCAGCCAAGGGTCAGAATT
CATCCCCCAAGATGCGCCTGAACTCACGCCCCAAACCGCCCCAGAGGAAGTTACCGAAGCAGTCACTCCAGAAGAAGATA
ATGACTTGATCTACGGCAAACATGCGGTGTTATCAGTGCTGGAGAGCGAACGTCCCCTCAACCGAATTTGGGTCACCTCC
CGCCTGCGCCACGCCAATCGTTTCCATACCCTCCTCCAGGCCGCCAAGAACCAAGGCACGGTGATCGACGAAGTGAGCAT
GTCCCGCCTAGACTATCTGACCAACCGGGGCGTCCACCAGGGCATCGCTGTGCAGACGGCTCCCTATGAATATATGGAGT
TGCCGGATCTCATTGAGCAAGCGAAGGCCAAAACAGAATCCCCCGTGGTTGTGATTGCCGACGGCATCACCGATCCCCAT
AATTTGGGGGCGATTATTCGTACTGCCGAAGCGATTGGTGCCCAAGGGATGATTATTCCCCAACGGCGGGCGGTGGGGGT
AACCTCAACGGTGATGAAGGTGGCCGCCGGTGCCCTTGAACATTTCCCGGTTGCGCGGGTGGTCAATCTTAGTCGGGCCA
TGGAAGAACTCAAGGAAGCTGGTTTCTGGATTTATGGCACTGCCGCCGGAACCAGTAAAGCCTTACACAATATCAAATTT
GAAGGTGCGATAGGATTAGTTATCGGTTCGGAAGGACAAGGTCTTAGTTTGTTGACGCAAAAGCATTGTGATGAACTGGT
TGCAATTCCGATGACCGGGAAAACCCCTAGCCTAAATGCTTCCGTCGCTGCGGCGATCGCCTTATATGAAGTGTACCGAC
AAAAGCTTGTACGCCAGGTGCAAATCACCCTCCCGGATACCCCCTAA

Upstream 100 bases:

>100_bases
TTTAAATAACCAGAGTCATACTCTAGGCGATCGCCCCAGCCCCTGCAACTGATTTTCCTTGACAAGTTAATACATCTGAA
CGACCAAAGACTGATTTTTT

Downstream 100 bases:

>100_bases
GGCAGTATGCAAAGTGAGCGCTTTCGGGATAAAACAAGAGTTGTTGGTTTGGATCCAGACAAGCTATCTTCAACAACAAG
TATTTTTCCAGTAGACCCAT

Product: rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MNKPHRSDSGKKYGRAAGGRDRKPSKKYGKASSFDRDRRSDRREDGGKFERGDRPAPRRKGQFSRRDEGGERSFKRFDKR
SSQGAGPNKRRPITDRPKPQRSQGSEFIPQDAPELTPQTAPEEVTEAVTPEEDNDLIYGKHAVLSVLESERPLNRIWVTS
RLRHANRFHTLLQAAKNQGTVIDEVSMSRLDYLTNRGVHQGIAVQTAPYEYMELPDLIEQAKAKTESPVVVIADGITDPH
NLGAIIRTAEAIGAQGMIIPQRRAVGVTSTVMKVAAGALEHFPVARVVNLSRAMEELKEAGFWIYGTAAGTSKALHNIKF
EGAIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNASVAAAIALYEVYRQKLVRQVQITLPDTP

Sequences:

>Translated_388_residues
MNKPHRSDSGKKYGRAAGGRDRKPSKKYGKASSFDRDRRSDRREDGGKFERGDRPAPRRKGQFSRRDEGGERSFKRFDKR
SSQGAGPNKRRPITDRPKPQRSQGSEFIPQDAPELTPQTAPEEVTEAVTPEEDNDLIYGKHAVLSVLESERPLNRIWVTS
RLRHANRFHTLLQAAKNQGTVIDEVSMSRLDYLTNRGVHQGIAVQTAPYEYMELPDLIEQAKAKTESPVVVIADGITDPH
NLGAIIRTAEAIGAQGMIIPQRRAVGVTSTVMKVAAGALEHFPVARVVNLSRAMEELKEAGFWIYGTAAGTSKALHNIKF
EGAIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNASVAAAIALYEVYRQKLVRQVQITLPDTP
>Mature_388_residues
MNKPHRSDSGKKYGRAAGGRDRKPSKKYGKASSFDRDRRSDRREDGGKFERGDRPAPRRKGQFSRRDEGGERSFKRFDKR
SSQGAGPNKRRPITDRPKPQRSQGSEFIPQDAPELTPQTAPEEVTEAVTPEEDNDLIYGKHAVLSVLESERPLNRIWVTS
RLRHANRFHTLLQAAKNQGTVIDEVSMSRLDYLTNRGVHQGIAVQTAPYEYMELPDLIEQAKAKTESPVVVIADGITDPH
NLGAIIRTAEAIGAQGMIIPQRRAVGVTSTVMKVAAGALEHFPVARVVNLSRAMEELKEAGFWIYGTAAGTSKALHNIKF
EGAIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNASVAAAIALYEVYRQKLVRQVQITLPDTP

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=282, Percent_Identity=26.241134751773, Blast_Score=88, Evalue=1e-17,
Organism=Escherichia coli, GI1790623, Length=247, Percent_Identity=42.1052631578947, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1788935, Length=244, Percent_Identity=25.8196721311475, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1790083, Length=171, Percent_Identity=28.6549707602339, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17555908, Length=264, Percent_Identity=29.1666666666667, Blast_Score=94, Evalue=9e-20,
Organism=Saccharomyces cerevisiae, GI6324775, Length=292, Percent_Identity=27.0547945205479, Blast_Score=89, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 42748; Mature: 42748

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPHRSDSGKKYGRAAGGRDRKPSKKYGKASSFDRDRRSDRREDGGKFERGDRPAPRRK
CCCCCCCCCCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
GQFSRRDEGGERSFKRFDKRSSQGAGPNKRRPITDRPKPQRSQGSEFIPQDAPELTPQTA
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PEEVTEAVTPEEDNDLIYGKHAVLSVLESERPLNRIWVTSRLRHANRFHTLLQAAKNQGT
HHHHHHHCCCCCCCCEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VIDEVSMSRLDYLTNRGVHQGIAVQTAPYEYMELPDLIEQAKAKTESPVVVIADGITDPH
CHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
NLGAIIRTAEAIGAQGMIIPQRRAVGVTSTVMKVAAGALEHFPVARVVNLSRAMEELKEA
HHHHHHHHHHHHCCCCEEECCCHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
GFWIYGTAAGTSKALHNIKFEGAIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNA
CCEEEEECCCCHHHHHHEEECCEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCCH
SVAAAIALYEVYRQKLVRQVQITLPDTP
HHHHHHHHHHHHHHHHHHHEEEECCCCC
>Mature Secondary Structure
MNKPHRSDSGKKYGRAAGGRDRKPSKKYGKASSFDRDRRSDRREDGGKFERGDRPAPRRK
CCCCCCCCCCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
GQFSRRDEGGERSFKRFDKRSSQGAGPNKRRPITDRPKPQRSQGSEFIPQDAPELTPQTA
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PEEVTEAVTPEEDNDLIYGKHAVLSVLESERPLNRIWVTSRLRHANRFHTLLQAAKNQGT
HHHHHHHCCCCCCCCEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VIDEVSMSRLDYLTNRGVHQGIAVQTAPYEYMELPDLIEQAKAKTESPVVVIADGITDPH
CHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
NLGAIIRTAEAIGAQGMIIPQRRAVGVTSTVMKVAAGALEHFPVARVVNLSRAMEELKEA
HHHHHHHHHHHHCCCCEEECCCHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
GFWIYGTAAGTSKALHNIKFEGAIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNA
CCEEEEECCCCHHHHHHEEECCEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCCH
SVAAAIALYEVYRQKLVRQVQITLPDTP
HHHHHHHHHHHHHHHHHHHEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]