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The map label for this gene is lspA [H]

Identifier: 170076939

GI number: 170076939

Start: 325764

End: 326270

Strand: Direct

Name: lspA [H]

Synonym: SYNPCC7002_A0311

Alternate gene names: 170076939

Gene position: 325764-326270 (Clockwise)

Preceding gene: 170076938

Following gene: 170076941

Centisome position: 10.83

GC content: 48.92

Gene sequence:

>507_bases
ATGGATCTGCGCCAAGATTTACTGAAAAATCGCTGGTTTTGGCTTGTTGCCTTCCTCGGATTAGTCCTCGATCAACTGAC
AAAAACCATTGTGCTCCAGACTTTGCCGGAAGTGGGTGATACCTTTGCCCTCTGGCCGAATGTCTTCCATTTCACCTATG
TGCAAAACACTGGGGCTGCCTTCAGTATCTTTACCGATGGGGTGCATTGGCTCCGGTGGTTGTCCTTGGGGGTCAGTGTG
GGTTTGATGGCTTTGGCTTGGTTTGGCGATCGCCAAACGCTCTGGGAACAAGGCGGCTACGGATTTATTCTTGCGGGGGC
GATGGGTAATGGCGTCGATCGCTTTTTATTTGGCTATGTGGTCGATTTTCTCGACTTTCGCCTGATTAATTTTCCCGTGT
TTAACATTGCCGATGTCTGTATCAACATTGGCATCGCCTGTTTATTGCTCAATTTGTGGTTTTCCTACCGCCTTGCCCAA
ACAGAATCGCCCCCTAACTCTAAGTAA

Upstream 100 bases:

>100_bases
TGGCCGTGGTGGCCTATGGGGTACGACGGATTCTCTTCTATTAAGCCAAAGCATTGGGCTTGATATTTTTTCTTTTTAGC
GAAACGGAAACTCTCTCTCC

Downstream 100 bases:

>100_bases
TCTTTTAATAATCTGGAGGGTGGAGCGATCGCCGTTATGGATTCTCAGAAAATATCAAGAATAGATATATTCACTGCCAT
TGTGTTCGTTTTGCCGCGAG

Product: lipoprotein signal peptidase

Products: NA

Alternate protein names: Prolipoprotein signal peptidase; Signal peptidase II; SPase II [H]

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MDLRQDLLKNRWFWLVAFLGLVLDQLTKTIVLQTLPEVGDTFALWPNVFHFTYVQNTGAAFSIFTDGVHWLRWLSLGVSV
GLMALAWFGDRQTLWEQGGYGFILAGAMGNGVDRFLFGYVVDFLDFRLINFPVFNIADVCINIGIACLLLNLWFSYRLAQ
TESPPNSK

Sequences:

>Translated_168_residues
MDLRQDLLKNRWFWLVAFLGLVLDQLTKTIVLQTLPEVGDTFALWPNVFHFTYVQNTGAAFSIFTDGVHWLRWLSLGVSV
GLMALAWFGDRQTLWEQGGYGFILAGAMGNGVDRFLFGYVVDFLDFRLINFPVFNIADVCINIGIACLLLNLWFSYRLAQ
TESPPNSK
>Mature_168_residues
MDLRQDLLKNRWFWLVAFLGLVLDQLTKTIVLQTLPEVGDTFALWPNVFHFTYVQNTGAAFSIFTDGVHWLRWLSLGVSV
GLMALAWFGDRQTLWEQGGYGFILAGAMGNGVDRFLFGYVVDFLDFRLINFPVFNIADVCINIGIACLLLNLWFSYRLAQ
TESPPNSK

Specific function: This protein specifically catalyzes the removal of signal peptides from prolipoproteins [H]

COG id: COG0597

COG function: function code MU; Lipoprotein signal peptidase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A8 family [H]

Homologues:

Organism=Escherichia coli, GI1786210, Length=156, Percent_Identity=34.6153846153846, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001872 [H]

Pfam domain/function: PF01252 Peptidase_A8 [H]

EC number: =3.4.23.36 [H]

Molecular weight: Translated: 19120; Mature: 19120

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS00855 SPASE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLRQDLLKNRWFWLVAFLGLVLDQLTKTIVLQTLPEVGDTFALWPNVFHFTYVQNTGAA
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEECCCCE
FSIFTDGVHWLRWLSLGVSVGLMALAWFGDRQTLWEQGGYGFILAGAMGNGVDRFLFGYV
EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
VDFLDFRLINFPVFNIADVCINIGIACLLLNLWFSYRLAQTESPPNSK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDLRQDLLKNRWFWLVAFLGLVLDQLTKTIVLQTLPEVGDTFALWPNVFHFTYVQNTGAA
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEECCCCE
FSIFTDGVHWLRWLSLGVSVGLMALAWFGDRQTLWEQGGYGFILAGAMGNGVDRFLFGYV
EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
VDFLDFRLINFPVFNIADVCINIGIACLLLNLWFSYRLAQTESPPNSK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA