| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170076899
Identifier: 170076899
GI number: 170076899
Start: 284712
End: 286823
Strand: Direct
Name: 170076899
Synonym: SYNPCC7002_A0271
Alternate gene names: NA
Gene position: 284712-286823 (Clockwise)
Preceding gene: 170076897
Following gene: 170076901
Centisome position: 9.47
GC content: 51.94
Gene sequence:
>2112_bases ATGACCAACCCAACCCGAATTTTGATGTGTGCTCCCGACCATTACGAGGTGGACTATGTCATTAACCCTTGGATGGAAGG AAACGTCCACAAATCGTCCCAAGCTCAAGCCATTGAACAGTGGCAGGCCCTACATCAAATCATCAAAGAATATGCCGTTG TTGACCTCGTGCCCCCTGCCCAGGGCTGGCCAGATATGGTTTTTACGGCCAATGCCGGCCTAGTCTTGGGTCAAAAAGCG ATTCTCAGTCGTTTCTATCACCCAGAGCGCCAAGGGGAAGAACCCTACTTTAAGCAATGGTTTGCGGAAAATGGTTTCCA GGTCTATGAGCTGCCCCAGGATTTGCCCTTTGAAGGGGCAGGGGATGCCCTCTTTGACCGGGATTCTGGAGCGTTGTGGG CCGGTTATGGTTTTCGCTCTGAACTCGACTCCCACGCCTACATTGCCCAGTGGCTCGATGTGGAAGTTTTATCCCTACGC CTGATCGATCCCCGCTTTTATCACCTCGATACTTGCTTCTGTCCCCTCAGCGGCGGCTATCTCCTCTACTATCCCCCTGC CTTTGATACGTACTCCAATGCCCTAATTGAGCGGCGGATTCCGGCGGAAAAACGTATTGTTGTCCCCGAGCCGGATGCGG TGAACTTTGCCTGCAATGCGGTCAATGTCGATGATGTGATCATCATGAATAAAATCAGCCCAGAACTCGAAACGGCGATC GCCACCAAGGGCTTTCAGGTGCGGCAAACGTCCCTCACGGAATTTCTCAAGGCAGGGGGAGCTGCAAAATGTTTAACCCT AAAAACCACAGAACCGATTCAAGAAACTGCCCAAGCCAATGCTCCGGTGGATAGTCGGATTATTCACCTCGAAGGGCACC TCCTCGATGCGGGCATTTTGAACCAAGCCTTGGATTTAATCAATGAACAGGGCGGCAGTGCAAAAGTATTAAATTTCAAC CTCGGCATCGAGCGAAAAAATACGTCATCGGCCAATGTACGGGTATCCGCACCCTCTCCCACCACCATGGAGGACATTAT GTCCGCCCTTATTGAAATGGGCGCGATCAGTGCTTCGGCAGAAGATATTCAGGATGCACACCTAGAAACCGTGAAGCAAA TGGGAGTCGCCCCCGATGATTTTTATGTCACGAATATCTATCCCACGGAGGTCAGGATTAAAGGCCAATGGGTTAAGGTG ACCCACCAACGGATGGACGGGGCGATCGCCATTAGTGAGAGCAACGGCACTATTCATGCCCGCTGTCGTCTGTTGCGGGA TCTCCAGGTGGGAGAAAAAGTTGTTGTGGGCATCGACGGGATTCGCACCAACCATAAAACCACCGCTCGCCCCAGTGCCG AAAAACAAGAATTTAGCTTCATGGGGGCCGGGGTTTCGAGTGAACGCCGTGTGGAATTGGTCGTTGAGCAAATTGCCTGG GAACTCCATAAAATCCGTGCCCAGGGTGGAAAAGTTGCGGTCACGGCTGGGCCAGTGGTGATCCATACCGGGGGGGCGCA ACATCTCGCCAATTTAATTCGCCAGGGCTATGTCCATACTTTGCTCGGTGGGAATGCGATCGCCGTCCACGACATTGAAC AATCAATGATGGGTACTTCCCTCGGCGTTGATATGAATAAAGGCGTTCCCGTGCGTGGGGGACACCGTCACCACCTCAAG GTAATTAATACTATTCGTCGCTGTGGCAGTATCGCCAATGCCGTGGCCCAGGGGCTCATTACAAAGGGGGTAATGTATGA ATGCGTCCAAAATAATGTGCCCTTCTGTTTAGCCGGATCTATTCGTGATGATGGCCCTCTCCCCGATACAGAAATGGATC TGATTCGCGCCCAGGAAGAATATGCTCGCTTGCTAGAAGGCACCAATATGGTTTTGATGCTTTCGACGATGCTCCATTCC ATTGGCGTCGGCAATATGACTCCTGCCGGGGTGAAGATGGTCTGTGTCGATATTAATCCTGCGGTAGTCACAAAACTAAG CGATCGCGGCTCGGTAGAATCCGTCGGTGTAGTCACCGATGTGGGGTTATTCCTCAGTCTCCTGACGCGCCAACTGGATC GACTCAACCAAAAAGCTGCAATTACTGTGTAA
Upstream 100 bases:
>100_bases CGCCACAGAAAACAGGGTTTTGTACCGTACCGATCAATACAATTCGCCCGCTTTTCCCGTTGCATGATTAGTCCTAAACC ATTCAGCTTTTAAATTGACC
Downstream 100 bases:
>100_bases TTCCCGGAACAGCCTAGGCGATCGCCAAAAAACTCCCTCGGAAAGTCTGGGGAGTTTTTTTGTTGCTGCTCCCGAATCAT GGCAATTAAAAAAACCACTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 703; Mature: 702
Protein sequence:
>703_residues MTNPTRILMCAPDHYEVDYVINPWMEGNVHKSSQAQAIEQWQALHQIIKEYAVVDLVPPAQGWPDMVFTANAGLVLGQKA ILSRFYHPERQGEEPYFKQWFAENGFQVYELPQDLPFEGAGDALFDRDSGALWAGYGFRSELDSHAYIAQWLDVEVLSLR LIDPRFYHLDTCFCPLSGGYLLYYPPAFDTYSNALIERRIPAEKRIVVPEPDAVNFACNAVNVDDVIIMNKISPELETAI ATKGFQVRQTSLTEFLKAGGAAKCLTLKTTEPIQETAQANAPVDSRIIHLEGHLLDAGILNQALDLINEQGGSAKVLNFN LGIERKNTSSANVRVSAPSPTTMEDIMSALIEMGAISASAEDIQDAHLETVKQMGVAPDDFYVTNIYPTEVRIKGQWVKV THQRMDGAIAISESNGTIHARCRLLRDLQVGEKVVVGIDGIRTNHKTTARPSAEKQEFSFMGAGVSSERRVELVVEQIAW ELHKIRAQGGKVAVTAGPVVIHTGGAQHLANLIRQGYVHTLLGGNAIAVHDIEQSMMGTSLGVDMNKGVPVRGGHRHHLK VINTIRRCGSIANAVAQGLITKGVMYECVQNNVPFCLAGSIRDDGPLPDTEMDLIRAQEEYARLLEGTNMVLMLSTMLHS IGVGNMTPAGVKMVCVDINPAVVTKLSDRGSVESVGVVTDVGLFLSLLTRQLDRLNQKAAITV
Sequences:
>Translated_703_residues MTNPTRILMCAPDHYEVDYVINPWMEGNVHKSSQAQAIEQWQALHQIIKEYAVVDLVPPAQGWPDMVFTANAGLVLGQKA ILSRFYHPERQGEEPYFKQWFAENGFQVYELPQDLPFEGAGDALFDRDSGALWAGYGFRSELDSHAYIAQWLDVEVLSLR LIDPRFYHLDTCFCPLSGGYLLYYPPAFDTYSNALIERRIPAEKRIVVPEPDAVNFACNAVNVDDVIIMNKISPELETAI ATKGFQVRQTSLTEFLKAGGAAKCLTLKTTEPIQETAQANAPVDSRIIHLEGHLLDAGILNQALDLINEQGGSAKVLNFN LGIERKNTSSANVRVSAPSPTTMEDIMSALIEMGAISASAEDIQDAHLETVKQMGVAPDDFYVTNIYPTEVRIKGQWVKV THQRMDGAIAISESNGTIHARCRLLRDLQVGEKVVVGIDGIRTNHKTTARPSAEKQEFSFMGAGVSSERRVELVVEQIAW ELHKIRAQGGKVAVTAGPVVIHTGGAQHLANLIRQGYVHTLLGGNAIAVHDIEQSMMGTSLGVDMNKGVPVRGGHRHHLK VINTIRRCGSIANAVAQGLITKGVMYECVQNNVPFCLAGSIRDDGPLPDTEMDLIRAQEEYARLLEGTNMVLMLSTMLHS IGVGNMTPAGVKMVCVDINPAVVTKLSDRGSVESVGVVTDVGLFLSLLTRQLDRLNQKAAITV >Mature_702_residues TNPTRILMCAPDHYEVDYVINPWMEGNVHKSSQAQAIEQWQALHQIIKEYAVVDLVPPAQGWPDMVFTANAGLVLGQKAI LSRFYHPERQGEEPYFKQWFAENGFQVYELPQDLPFEGAGDALFDRDSGALWAGYGFRSELDSHAYIAQWLDVEVLSLRL IDPRFYHLDTCFCPLSGGYLLYYPPAFDTYSNALIERRIPAEKRIVVPEPDAVNFACNAVNVDDVIIMNKISPELETAIA TKGFQVRQTSLTEFLKAGGAAKCLTLKTTEPIQETAQANAPVDSRIIHLEGHLLDAGILNQALDLINEQGGSAKVLNFNL GIERKNTSSANVRVSAPSPTTMEDIMSALIEMGAISASAEDIQDAHLETVKQMGVAPDDFYVTNIYPTEVRIKGQWVKVT HQRMDGAIAISESNGTIHARCRLLRDLQVGEKVVVGIDGIRTNHKTTARPSAEKQEFSFMGAGVSSERRVELVVEQIAWE LHKIRAQGGKVAVTAGPVVIHTGGAQHLANLIRQGYVHTLLGGNAIAVHDIEQSMMGTSLGVDMNKGVPVRGGHRHHLKV INTIRRCGSIANAVAQGLITKGVMYECVQNNVPFCLAGSIRDDGPLPDTEMDLIRAQEEYARLLEGTNMVLMLSTMLHSI GVGNMTPAGVKMVCVDINPAVVTKLSDRGSVESVGVVTDVGLFLSLLTRQLDRLNQKAAITV
Specific function: Unknown
COG id: COG1915
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Caenorhabditis elegans, GI25147433, Length=273, Percent_Identity=41.7582417582418, Blast_Score=204, Evalue=1e-52, Organism=Caenorhabditis elegans, GI71998636, Length=265, Percent_Identity=40, Blast_Score=201, Evalue=2e-51, Organism=Caenorhabditis elegans, GI17540300, Length=273, Percent_Identity=39.1941391941392, Blast_Score=187, Evalue=1e-47, Organism=Caenorhabditis elegans, GI71998638, Length=103, Percent_Identity=42.7184466019417, Blast_Score=90, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005239 - InterPro: IPR007545 [H]
Pfam domain/function: PF04455 Saccharop_dh_N [H]
EC number: NA
Molecular weight: Translated: 77038; Mature: 76907
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNPTRILMCAPDHYEVDYVINPWMEGNVHKSSQAQAIEQWQALHQIIKEYAVVDLVPPA CCCCCEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCC QGWPDMVFTANAGLVLGQKAILSRFYHPERQGEEPYFKQWFAENGFQVYELPQDLPFEGA CCCCCEEEEECCCEEECHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCC GDALFDRDSGALWAGYGFRSELDSHAYIAQWLDVEVLSLRLIDPRFYHLDTCFCPLSGGY CCCEEECCCCCEEECCCCHHHCCCHHHHHHHHCEEEEEEEEECCCEEEEEEEEEECCCCE LLYYPPAFDTYSNALIERRIPAEKRIVVPEPDAVNFACNAVNVDDVIIMNKISPELETAI EEEECCCCCHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCCCCEEEEECCCCHHHHHH ATKGFQVRQTSLTEFLKAGGAAKCLTLKTTEPIQETAQANAPVDSRIIHLEGHLLDAGIL HCCCCEEHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCCCEEEEEECCEECHHHH NQALDLINEQGGSAKVLNFNLGIERKNTSSANVRVSAPSPTTMEDIMSALIEMGAISASA HHHHHHHHCCCCCEEEEEEEECEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCH EDIQDAHLETVKQMGVAPDDFYVTNIYPTEVRIKGQWVKVTHQRMDGAIAISESNGTIHA HHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEECEEEEEEHHHCCCEEEEECCCCEEHH RCRLLRDLQVGEKVVVGIDGIRTNHKTTARPSAEKQEFSFMGAGVSSERRVELVVEQIAW HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHEECCCCCCCHHHHHHHHHHHH ELHKIRAQGGKVAVTAGPVVIHTGGAQHLANLIRQGYVHTLLGGNAIAVHDIEQSMMGTS HHHHHHHCCCEEEEEECCEEEECCCHHHHHHHHHCCCEEEEECCCEEEEEEHHHHHCCCC LGVDMNKGVPVRGGHRHHLKVINTIRRCGSIANAVAQGLITKGVMYECVQNNVPFCLAGS CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC IRDDGPLPDTEMDLIRAQEEYARLLEGTNMVLMLSTMLHSIGVGNMTPAGVKMVCVDINP CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCEEEEEEECCH AVVTKLSDRGSVESVGVVTDVGLFLSLLTRQLDRLNQKAAITV HHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECC >Mature Secondary Structure TNPTRILMCAPDHYEVDYVINPWMEGNVHKSSQAQAIEQWQALHQIIKEYAVVDLVPPA CCCCEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCC QGWPDMVFTANAGLVLGQKAILSRFYHPERQGEEPYFKQWFAENGFQVYELPQDLPFEGA CCCCCEEEEECCCEEECHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCC GDALFDRDSGALWAGYGFRSELDSHAYIAQWLDVEVLSLRLIDPRFYHLDTCFCPLSGGY CCCEEECCCCCEEECCCCHHHCCCHHHHHHHHCEEEEEEEEECCCEEEEEEEEEECCCCE LLYYPPAFDTYSNALIERRIPAEKRIVVPEPDAVNFACNAVNVDDVIIMNKISPELETAI EEEECCCCCHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCCCCEEEEECCCCHHHHHH ATKGFQVRQTSLTEFLKAGGAAKCLTLKTTEPIQETAQANAPVDSRIIHLEGHLLDAGIL HCCCCEEHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCCCEEEEEECCEECHHHH NQALDLINEQGGSAKVLNFNLGIERKNTSSANVRVSAPSPTTMEDIMSALIEMGAISASA HHHHHHHHCCCCCEEEEEEEECEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCH EDIQDAHLETVKQMGVAPDDFYVTNIYPTEVRIKGQWVKVTHQRMDGAIAISESNGTIHA HHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEECEEEEEEHHHCCCEEEEECCCCEEHH RCRLLRDLQVGEKVVVGIDGIRTNHKTTARPSAEKQEFSFMGAGVSSERRVELVVEQIAW HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHEECCCCCCCHHHHHHHHHHHH ELHKIRAQGGKVAVTAGPVVIHTGGAQHLANLIRQGYVHTLLGGNAIAVHDIEQSMMGTS HHHHHHHCCCEEEEEECCEEEECCCHHHHHHHHHCCCEEEEECCCEEEEEEHHHHHCCCC LGVDMNKGVPVRGGHRHHLKVINTIRRCGSIANAVAQGLITKGVMYECVQNNVPFCLAGS CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC IRDDGPLPDTEMDLIRAQEEYARLLEGTNMVLMLSTMLHSIGVGNMTPAGVKMVCVDINP CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCEEEEEEECCH AVVTKLSDRGSVESVGVVTDVGLFLSLLTRQLDRLNQKAAITV HHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]