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The map label for this gene is lrtA

Identifier: 170076891

GI number: 170076891

Start: 276911

End: 277492

Strand: Direct

Name: lrtA

Synonym: SYNPCC7002_A0263

Alternate gene names: 170076891

Gene position: 276911-277492 (Clockwise)

Preceding gene: 170076889

Following gene: 170076893

Centisome position: 9.21

GC content: 44.67

Gene sequence:

>582_bases
ATGAAGCTATTGATCCAAGGCAACAACATTGCAGTAACTGAATCGATCCATGACTATGTTGAAAGTAAGCTTGAAAAAGC
AACCAAGCACTTTCAAACCTTCGCCACAAAAGTAGATGTGCACTTGTCTGTTGCTAACAATGCTCGCATTACCGACAAGC
ATAAAGCTGAAGTTACTGTTTACGCCAATGGTACAGTGATTCGCGCCCAGGAAGGCAGTGAAAATCTCTACGCCAGCATT
GACCTTGTTTCTGATAAAATCGCCCGCCAACTCCGCAAATATAAAGAGAAAAATTTTGGCAAGAAAACCCACGTTCAGGA
AAAAACCAGTGAAGTGTTACCTGAGGATCCGGTGCCAGATAATCTCATTGGCGATCGCGCCCCAGAGCTTCCCTCTGAAG
TGGTACGGATGAAGTATTTTGCGATGCCCCCCATGACCATTGATGAGGCTTTAGAGCAGTTGCAGTTGGTAGACCACGAC
TTCTATATGTTCTTGAACAAAGACACAAACGCTATCAATGTGATCTATATCCGCAACCACGGTGGTTATGGTGTAATCCA
ACCACGCTTGGGCAAAGAATAG

Upstream 100 bases:

>100_bases
TTTCATTGCGAATTTTCTTAGGCTTAAAATCCAGATTTCATTCGTAAATTGTGTACAAAGTAAACTTGTTTTATCCATTC
AGATGGAGTAACCAGAGACT

Downstream 100 bases:

>100_bases
TTGATTTTTTCCAGGTTCATTTAATGGCTTTTAGACAATAGTTATTATTTGGATCATCGGCAAATCTAATCCCTGATGTA
AAGGAAAGTTTTTTAACATA

Product: light-repressed protein LrtA (ribosomal subunit interface protein)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITDKHKAEVTVYANGTVIRAQEGSENLYASI
DLVSDKIARQLRKYKEKNFGKKTHVQEKTSEVLPEDPVPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHD
FYMFLNKDTNAINVIYIRNHGGYGVIQPRLGKE

Sequences:

>Translated_193_residues
MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITDKHKAEVTVYANGTVIRAQEGSENLYASI
DLVSDKIARQLRKYKEKNFGKKTHVQEKTSEVLPEDPVPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHD
FYMFLNKDTNAINVIYIRNHGGYGVIQPRLGKE
>Mature_193_residues
MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITDKHKAEVTVYANGTVIRAQEGSENLYASI
DLVSDKIARQLRKYKEKNFGKKTHVQEKTSEVLPEDPVPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHD
FYMFLNKDTNAINVIYIRNHGGYGVIQPRLGKE

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LRTA_SYNP2 (P47908)

Other databases:

- EMBL:   L29194
- EMBL:   CP000951
- PIR:   A53914
- RefSeq:   YP_001733529.1
- ProteinModelPortal:   P47908
- SMR:   P47908
- GeneID:   6057840
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0263
- HOGENOM:   HBG675832
- OMA:   NVVYKRK
- ProtClustDB:   CLSK893348
- GO:   GO:0005488
- InterPro:   IPR003489
- Gene3D:   G3DSA:3.30.160.100
- TIGRFAMs:   TIGR00741

Pfam domain/function: PF02482 Ribosomal_S30AE; SSF69754 Ribosomal_S30Ae/sigma54_mod

EC number: NA

Molecular weight: Translated: 21911; Mature: 21911

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITDKHKAEVTV
CEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEECCCCCEEEEE
YANGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQEKTSEVLPEDPVPD
EECCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
NLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTNAINVIYIRNH
CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEEC
GGYGVIQPRLGKE
CCCEEECCCCCCC
>Mature Secondary Structure
MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITDKHKAEVTV
CEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEECCCCCEEEEE
YANGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQEKTSEVLPEDPVPD
EECCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
NLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTNAINVIYIRNH
CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEEC
GGYGVIQPRLGKE
CCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8063707