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The map label for this gene is psbJ

Identifier: 170076863

GI number: 170076863

Start: 241484

End: 241603

Strand: Direct

Name: psbJ

Synonym: SYNPCC7002_A0233

Alternate gene names: 170076863

Gene position: 241484-241603 (Clockwise)

Preceding gene: 170076862

Following gene: 170076864

Centisome position: 8.03

GC content: 50.83

Gene sequence:

>120_bases
ATGTCTGAAGGCGGAAAAATCCCACTTTGGATCGTTGCAGTTGTCGCTGGTATGGGCGTCATTGCGGTTGTCGGTATCTT
TTTCTACGGTGCATATGCAGGGGTAGGCTCTGCGGTTTAG

Upstream 100 bases:

>100_bases
ATCGCTGTGCTCGGTATTCTATTTTCCAGCTACTTCTTTAACTAAGCTGGCAGCCCTTTAATTTCAGCCCTTTAATTTAT
TTTTTTCGGAGGTTGTTCTC

Downstream 100 bases:

>100_bases
ATGCACAATTCGCTCTAATTAATTGTTGAGACACCACCTGCTCTAATTGAGGGGTGGTTTTGTTTTAGGAACTTCTGGGG
CAATAGGGAGTCCAAAAAAG

Product: photosystem II reaction center protein J

Products: NA

Alternate protein names: PSII-J

Number of amino acids: Translated: 39; Mature: 38

Protein sequence:

>39_residues
MSEGGKIPLWIVAVVAGMGVIAVVGIFFYGAYAGVGSAV

Sequences:

>Translated_39_residues
MSEGGKIPLWIVAVVAGMGVIAVVGIFFYGAYAGVGSAV
>Mature_38_residues
SEGGKIPLWIVAVVAGMGVIAVVGIFFYGAYAGVGSAV

Specific function: This protein is a component of the reaction center of photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbJ family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBJ_SYNP2 (Q8RSW0)

Other databases:

- EMBL:   AY075046
- EMBL:   CP000951
- RefSeq:   YP_001733501.1
- ProteinModelPortal:   Q8RSW0
- SMR:   Q8RSW0
- GeneID:   6057605
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0233
- HOGENOM:   HBG747967
- ProtClustDB:   PRK02565
- GO:   GO:0015979
- HAMAP:   MF_01305
- InterPro:   IPR002682

Pfam domain/function: PF01788 PsbJ

EC number: NA

Molecular weight: Translated: 3858; Mature: 3726

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x16a21df0)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEGGKIPLWIVAVVAGMGVIAVVGIFFYGAYAGVGSAV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
>Mature Secondary Structure 
SEGGKIPLWIVAVVAGMGVIAVVGIFFYGAYAGVGSAV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11914373