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The map label for this gene is psbF

Identifier: 170076861

GI number: 170076861

Start: 241168

End: 241299

Strand: Direct

Name: psbF

Synonym: SYNPCC7002_A0231

Alternate gene names: 170076861

Gene position: 241168-241299 (Clockwise)

Preceding gene: 170076860

Following gene: 170076862

Centisome position: 8.02

GC content: 50.76

Gene sequence:

>132_bases
ATGACAAGCGGTCCTAACCAACCTGTTTCTTATCCAATTTTTACCGTCCGTTGGTTGGCGGTGCACACCCTGGCTGTACC
CTCGGTTTTCTTCCTAGGGGCGATCGCCGCTATGCAGTTTATTCAACGTTAG

Upstream 100 bases:

>100_bases
ATTGTGACTGATCGTTACAAAGCGATTGATCAGATCAATGAGTTTAACAATTAAGTAACGCGCGTTTTTCTTTGCTGTAT
TCACTAAAAGGTTTTGTATT

Downstream 100 bases:

>100_bases
GAGCTTCCGATGGAAAGAAATCAAAATCCCAACAGACAGCCTGTGGAACTAAACCGGACTTCTCTATATCTGGGTTTACT
TCTAATCGCTGTGCTCGGTA

Product: cytochrome b559 subunit beta

Products: NA

Alternate protein names: PSII reaction center subunit VI

Number of amino acids: Translated: 43; Mature: 42

Protein sequence:

>43_residues
MTSGPNQPVSYPIFTVRWLAVHTLAVPSVFFLGAIAAMQFIQR

Sequences:

>Translated_43_residues
MTSGPNQPVSYPIFTVRWLAVHTLAVPSVFFLGAIAAMQFIQR
>Mature_42_residues
TSGPNQPVSYPIFTVRWLAVHTLAVPSVFFLGAIAAMQFIQR

Specific function: This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbE/psbF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBF_SYNP2 (Q8RSW2)

Other databases:

- EMBL:   AY075046
- EMBL:   CP000951
- RefSeq:   YP_001733499.1
- ProteinModelPortal:   Q8RSW2
- SMR:   Q8RSW2
- GeneID:   6057594
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0231
- HOGENOM:   HBG559004
- ProtClustDB:   PRK02561
- GO:   GO:0009536
- GO:   GO:0006810
- HAMAP:   MF_00643
- InterPro:   IPR006241
- InterPro:   IPR006216
- InterPro:   IPR013081
- PIRSF:   PIRSF000037
- TIGRFAMs:   TIGR01333

Pfam domain/function: PF00283 Cytochrom_B559

EC number: NA

Molecular weight: Translated: 4764; Mature: 4632

Theoretical pI: Translated: 11.15; Mature: 11.15

Prosite motif: PS00537 CYTOCHROME_B559

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x19f90934)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSGPNQPVSYPIFTVRWLAVHTLAVPSVFFLGAIAAMQFIQR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
>Mature Secondary Structure 
TSGPNQPVSYPIFTVRWLAVHTLAVPSVFFLGAIAAMQFIQR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11914373