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The map label for this gene is hypA

Identifier: 170076833

GI number: 170076833

Start: 212334

End: 212675

Strand: Direct

Name: hypA

Synonym: SYNPCC7002_A0202

Alternate gene names: 170076833

Gene position: 212334-212675 (Clockwise)

Preceding gene: 170076832

Following gene: 170076834

Centisome position: 7.06

GC content: 43.86

Gene sequence:

>342_bases
ATGCATGAAGTAGCCATTATGACAGAAACCGTGGCGATCGCCAATGCAGCAGCAGAGCGACAAAATGCCACAAAAATTGT
AGGTTTAACCATGCGAATTGGTGCAATCAGTGGTGTCGTTCCTGAAGCCCTGAGTTTTGCCTTTGAAGCGGTGGCAGGCG
GAACCCTTGCCGAACAGGCTCAACTAATCATTGAAACGGTTCCTGTGACCTGTTATTGTGCCCAATGCGATCGCCCCTTT
ACACCCCCTGATTTATTTTATGAATGTCCGTTATGTAGTAGTTTAAGTCAACATATTTTAAGTGGTAAAGAAGTCGAATT
AAAATCCTTAGAGGTGATTTAA

Upstream 100 bases:

>100_bases
TAATCCCTGCTCAAGATTTTAAACTGGGAGAAAACTATTCTGAAATAACCCAAAAAGCAATCGAAACAGCGATTCATCTT
TTGCAAGAACGACTCACACC

Downstream 100 bases:

>100_bases
ATTATGTGTGGAAATTGCGGTTGTAACGCTGTTGAAAAACCTGTGGAAATTCATACCCACGCCCATGATCATTCCCACGG
GCATCATGACCATCATCACC

Product: hydrogenase nickel insertion protein HypA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MHEVAIMTETVAIANAAAERQNATKIVGLTMRIGAISGVVPEALSFAFEAVAGGTLAEQAQLIIETVPVTCYCAQCDRPF
TPPDLFYECPLCSSLSQHILSGKEVELKSLEVI

Sequences:

>Translated_113_residues
MHEVAIMTETVAIANAAAERQNATKIVGLTMRIGAISGVVPEALSFAFEAVAGGTLAEQAQLIIETVPVTCYCAQCDRPF
TPPDLFYECPLCSSLSQHILSGKEVELKSLEVI
>Mature_113_residues
MHEVAIMTETVAIANAAAERQNATKIVGLTMRIGAISGVVPEALSFAFEAVAGGTLAEQAQLIIETVPVTCYCAQCDRPF
TPPDLFYECPLCSSLSQHILSGKEVELKSLEVI

Specific function: Probably plays a role in an hydrogenase nickel cofactor insertion step

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family

Homologues:

Organism=Escherichia coli, GI1789365, Length=112, Percent_Identity=30.3571428571429, Blast_Score=63, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HYPA_SYNP2 (Q8KX22)

Other databases:

- EMBL:   AF381045
- EMBL:   CP000951
- RefSeq:   YP_001733471.1
- GeneID:   6057321
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0202
- HOGENOM:   HBG688671
- OMA:   CFELVCR
- ProtClustDB:   CLSK893234
- HAMAP:   MF_00213
- InterPro:   IPR000688
- InterPro:   IPR020538
- TIGRFAMs:   TIGR00100

Pfam domain/function: PF01155 HypA

EC number: NA

Molecular weight: Translated: 12040; Mature: 12040

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: PS01249 HYPA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEVAIMTETVAIANAAAERQNATKIVGLTMRIGAISGVVPEALSFAFEAVAGGTLAEQA
CCCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHCHHHHHHHHHHHHHCCCCHHHHH
QLIIETVPVTCYCAQCDRPFTPPDLFYECPLCSSLSQHILSGKEVELKSLEVI
HHHHEECCCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCEEEECC
>Mature Secondary Structure
MHEVAIMTETVAIANAAAERQNATKIVGLTMRIGAISGVVPEALSFAFEAVAGGTLAEQA
CCCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHCHHHHHHHHHHHHHCCCCHHHHH
QLIIETVPVTCYCAQCDRPFTPPDLFYECPLCSSLSQHILSGKEVELKSLEVI
HHHHEECCCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA