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The map label for this gene is petJ

Identifier: 170076799

GI number: 170076799

Start: 173166

End: 173519

Strand: Direct

Name: petJ

Synonym: SYNPCC7002_A0167

Alternate gene names: 170076799

Gene position: 173166-173519 (Clockwise)

Preceding gene: 170076797

Following gene: 170076801

Centisome position: 5.76

GC content: 50.0

Gene sequence:

>354_bases
TTGAAAAAATTACTTGCTATTGCTTTAACCGTACTTGCTACTGTTTTTGCCTTCGGGACTCCTGCATTTGCCGCTGATGC
TGCTGCTGGTGCCCAGGTATTTGCCGCTAACTGTGCCGCTTGCCATGCTGGTGGTAACAACGCAGTCATGCCCACCAAAA
CCCTAAAGGCTGATGCCCTAAAAACTTACCTCGCTGGCTACAAAGATGGCAGCAAGTCCCTCGAAGAAGCGGTTGCCTAC
CAAGTAACCAACGGACAAGGGGCAATGCCTGCTTTCGGTGGTCGTCTAAGCGATGCTGACATTGCTAACGTTGCCGCTTA
CATCGCTGACCAAGCAGAAAACAACAAATGGTAA

Upstream 100 bases:

>100_bases
TTGAACCAAACGACAAGATCGATAAAATATAGTCTGGTTGATTATATTAAACTTTTAACCAAATTCTTTTTCTGTTGAGA
GCATTGAGAGGAAAACTCCT

Downstream 100 bases:

>100_bases
ACGACTGATTGCCTCAAAATCAGTTGCAACCCATTCCCCCATAGACCAGTTATTTTGCTTAAATAACTGGTTTTTTTATG
GCGATTAACCCTTTCGACAG

Product: cytochrome c6 precursor (cytochrome c553)

Products: NA

Alternate protein names: Cytochrome c-553; Cytochrome c553; Soluble cytochrome f

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MKKLLAIALTVLATVFAFGTPAFAADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAY
QVTNGQGAMPAFGGRLSDADIANVAAYIADQAENNKW

Sequences:

>Translated_117_residues
MKKLLAIALTVLATVFAFGTPAFAADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAY
QVTNGQGAMPAFGGRLSDADIANVAAYIADQAENNKW
>Mature_117_residues
MKKLLAIALTVLATVFAFGTPAFAADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAY
QVTNGQGAMPAFGGRLSDADIANVAAYIADQAENNKW

Specific function: Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cellular thylakoid lumen (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PetJ subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CYC6_SYNP2 (O30881)

Other databases:

- EMBL:   AF020306
- EMBL:   CP000951
- RefSeq:   YP_001733437.1
- PDB:   1T58
- PDB:   3DR0
- PDBsum:   1T58
- PDBsum:   3DR0
- ProteinModelPortal:   O30881
- SMR:   O30881
- GeneID:   6057071
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0167
- HOGENOM:   HBG752107
- OMA:   TNGKNAM
- GO:   GO:0015979
- GO:   GO:0006810
- HAMAP:   MF_00594
- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168
- Gene3D:   G3DSA:1.10.760.10
- PRINTS:   PR00605

Pfam domain/function: PF00034 Cytochrom_C; SSF46626 Cytochrome_c

EC number: NA

Molecular weight: Translated: 11916; Mature: 11916

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS51007 CYTC

Important sites: BINDING 38-38 BINDING 41-41

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLAIALTVLATVFAFGTPAFAADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADAL
CHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
KTYLAGYKDGSKSLEEAVAYQVTNGQGAMPAFGGRLSDADIANVAAYIADQAENNKW
HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKKLLAIALTVLATVFAFGTPAFAADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADAL
CHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
KTYLAGYKDGSKSLEEAVAYQVTNGQGAMPAFGGRLSDADIANVAAYIADQAENNKW
HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA