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The map label for this gene is yjjU [H]

Identifier: 170025845

GI number: 170025845

Start: 4006789

End: 4008063

Strand: Reverse

Name: yjjU [H]

Synonym: YPK_3630

Alternate gene names: 170025845

Gene position: 4008063-4006789 (Counterclockwise)

Preceding gene: 170025846

Following gene: 170025844

Centisome position: 85.47

GC content: 48.86

Gene sequence:

>1275_bases
GTGGGATACAGAATACCTATTACGCTCGGTAATATTGAGCCACTCGCCTATAAACCCTATCAGCCCGGTAAAATGGCGCT
GGTCTGTGAGGGGGGCGGGCAACGGGGGATTTTTACAGCCGGTGTGCTGGATGAATTCCATCGTGCTCGCTTTAACCCTT
TTGATCTCATGATTGGCACCTCAGCAGGGGCGCAAAATTTATCTGCCTTTATTTGCGGGCAACCCGGTTACGCACGGCGA
GTTATTACCCGTTACACCACCACAGCCAATTTTTTTAACCCATTACGCTTTGTACGTGGGGGCAATTTAATTGATCTCGA
TTGGCTAGTGGATATCACTTCCCAACAGTACCCTTTGGCATTCGATCACGCTGAACAATATTTGCATCAGGGACGCGAGT
TTTTAATGTGTGCTTGTCGCAGTGATGATTTCGAACCAACGTATATTTCCCCAACCAGAGAAAACTGGCTAACAGCGATT
AAAGCCTCCAGCGCCATCCCCGGTTTATATCGGCAGGGCGTTGAGTTGGATGGGTTGAGTTATCTGGATGGGGGTATCAG
CGATGCGATCCCGGTAGAAGAGGCTTATCGCCGTGGCGCAGAGACGATAGTGGTGATCCGCACGGTGCCTTCGCAGGCTC
ACTATACGCCGCAATGGTTTAAGCGGATTGAACAATGGCTGAGTGAAAGCAGCTTGCAGCAATTGGTGCGGATTATGCAG
CAGCATGAGCGGAGTTATCATCGTATTCAGCAATTTATCGAGAAACCGCCGGGCGATGTACGAATTTTCGAAATTTTCCC
ATCAAAACCACTCGCCAGTAAGGCATTGGGGAGCGGGGCGGTGGCTCTGAATCGTGACTATCATTTAGGCCGCCGCTGTG
GCCGCTATTTTCTGGCAACCATTGGGCGTTGGTTATTACCTCGTGAGTCGTTGGGGGATAGCGATAAAACCTCCATTTCC
CTTTCACGCCGCATTATTCAACCACAAAATATTATCCAAACACCGAACATTTTCCAAACAAAGAACATTAATCAGCTGAA
TAATACCTATGATTACAGTGGGTCTAAAGAACGCTTTACCGCGATATTCTCCACAGAACCGTCTGTCACGTTATCTGATC
TCACCGCGCCTTCCGAGGTGCAGACAACGGCAACGGCAGCACAAATAAATGAGCCCCTTGATCCTGCCTCACTGACTGTC
GTTGATACTGAACAAGCGGAGGCTAACTCTTTACCCGTCGATATCACTTTGCCACCGAATCTGACAAAAAAATAA

Upstream 100 bases:

>100_bases
TTTACGGGACGTAAGCGCCTTTAACAAGGCAGTAGGGGTGACAGCAAAGGGCAATAAGGGGTATCGTCAACACCTGTTCG
TCATGAATTAAGGATAGATG

Downstream 100 bases:

>100_bases
AGGTAATACTGTGTGATGAGAACGCCAGATAAGCCGATGCCGTATTTTATCGATACCCACTGTCATTTTGACTTCCCTCC
GTTCACCGGTGATGAAGCCG

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MGYRIPITLGNIEPLAYKPYQPGKMALVCEGGGQRGIFTAGVLDEFHRARFNPFDLMIGTSAGAQNLSAFICGQPGYARR
VITRYTTTANFFNPLRFVRGGNLIDLDWLVDITSQQYPLAFDHAEQYLHQGREFLMCACRSDDFEPTYISPTRENWLTAI
KASSAIPGLYRQGVELDGLSYLDGGISDAIPVEEAYRRGAETIVVIRTVPSQAHYTPQWFKRIEQWLSESSLQQLVRIMQ
QHERSYHRIQQFIEKPPGDVRIFEIFPSKPLASKALGSGAVALNRDYHLGRRCGRYFLATIGRWLLPRESLGDSDKTSIS
LSRRIIQPQNIIQTPNIFQTKNINQLNNTYDYSGSKERFTAIFSTEPSVTLSDLTAPSEVQTTATAAQINEPLDPASLTV
VDTEQAEANSLPVDITLPPNLTKK

Sequences:

>Translated_424_residues
MGYRIPITLGNIEPLAYKPYQPGKMALVCEGGGQRGIFTAGVLDEFHRARFNPFDLMIGTSAGAQNLSAFICGQPGYARR
VITRYTTTANFFNPLRFVRGGNLIDLDWLVDITSQQYPLAFDHAEQYLHQGREFLMCACRSDDFEPTYISPTRENWLTAI
KASSAIPGLYRQGVELDGLSYLDGGISDAIPVEEAYRRGAETIVVIRTVPSQAHYTPQWFKRIEQWLSESSLQQLVRIMQ
QHERSYHRIQQFIEKPPGDVRIFEIFPSKPLASKALGSGAVALNRDYHLGRRCGRYFLATIGRWLLPRESLGDSDKTSIS
LSRRIIQPQNIIQTPNIFQTKNINQLNNTYDYSGSKERFTAIFSTEPSVTLSDLTAPSEVQTTATAAQINEPLDPASLTV
VDTEQAEANSLPVDITLPPNLTKK
>Mature_423_residues
GYRIPITLGNIEPLAYKPYQPGKMALVCEGGGQRGIFTAGVLDEFHRARFNPFDLMIGTSAGAQNLSAFICGQPGYARRV
ITRYTTTANFFNPLRFVRGGNLIDLDWLVDITSQQYPLAFDHAEQYLHQGREFLMCACRSDDFEPTYISPTRENWLTAIK
ASSAIPGLYRQGVELDGLSYLDGGISDAIPVEEAYRRGAETIVVIRTVPSQAHYTPQWFKRIEQWLSESSLQQLVRIMQQ
HERSYHRIQQFIEKPPGDVRIFEIFPSKPLASKALGSGAVALNRDYHLGRRCGRYFLATIGRWLLPRESLGDSDKTSISL
SRRIIQPQNIIQTPNIFQTKNINQLNNTYDYSGSKERFTAIFSTEPSVTLSDLTAPSEVQTTATAAQINEPLDPASLTVV
DTEQAEANSLPVDITLPPNLTKK

Specific function: Probable lipid hydrolase [H]

COG id: COG4667

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Escherichia coli, GI1790837, Length=348, Percent_Identity=63.5057471264368, Blast_Score=468, Evalue=1e-133,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 47530; Mature: 47399

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYRIPITLGNIEPLAYKPYQPGKMALVCEGGGQRGIFTAGVLDEFHRARFNPFDLMIGT
CCEEEEEEECCCCCCEECCCCCCCEEEEECCCCCCCEEEHHHHHHHHHCCCCCEEEEEEC
SAGAQNLSAFICGQPGYARRVITRYTTTANFFNPLRFVRGGNLIDLDWLVDITSQQYPLA
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHEEEEECCCCCCEE
FDHAEQYLHQGREFLMCACRSDDFEPTYISPTRENWLTAIKASSAIPGLYRQGVELDGLS
HHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCH
YLDGGISDAIPVEEAYRRGAETIVVIRTVPSQAHYTPQWFKRIEQWLSESSLQQLVRIMQ
HHCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QHERSYHRIQQFIEKPPGDVRIFEIFPSKPLASKALGSGAVALNRDYHLGRRCGRYFLAT
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHH
IGRWLLPRESLGDSDKTSISLSRRIIQPQNIIQTPNIFQTKNINQLNNTYDYSGSKERFT
HHHHHCCHHHCCCCCCHHHHHHHHHCCCHHHCCCCCCEECCCCHHCCCCCCCCCCCCEEE
AIFSTEPSVTLSDLTAPSEVQTTATAAQINEPLDPASLTVVDTEQAEANSLPVDITLPPN
EEEECCCCEEHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCC
LTKK
CCCC
>Mature Secondary Structure 
GYRIPITLGNIEPLAYKPYQPGKMALVCEGGGQRGIFTAGVLDEFHRARFNPFDLMIGT
CEEEEEEECCCCCCEECCCCCCCEEEEECCCCCCCEEEHHHHHHHHHCCCCCEEEEEEC
SAGAQNLSAFICGQPGYARRVITRYTTTANFFNPLRFVRGGNLIDLDWLVDITSQQYPLA
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHEEEEECCCCCCEE
FDHAEQYLHQGREFLMCACRSDDFEPTYISPTRENWLTAIKASSAIPGLYRQGVELDGLS
HHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCH
YLDGGISDAIPVEEAYRRGAETIVVIRTVPSQAHYTPQWFKRIEQWLSESSLQQLVRIMQ
HHCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QHERSYHRIQQFIEKPPGDVRIFEIFPSKPLASKALGSGAVALNRDYHLGRRCGRYFLAT
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHH
IGRWLLPRESLGDSDKTSISLSRRIIQPQNIIQTPNIFQTKNINQLNNTYDYSGSKERFT
HHHHHCCHHHCCCCCCHHHHHHHHHCCCHHHCCCCCCEECCCCHHCCCCCCCCCCCCEEE
AIFSTEPSVTLSDLTAPSEVQTTATAAQINEPLDPASLTVVDTEQAEANSLPVDITLPPN
EEEECCCCEEHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCC
LTKK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]