Click here to switch to the map view.

The map label for this gene is deoB [H]

Identifier: 170025840

GI number: 170025840

Start: 3999942

End: 4001165

Strand: Reverse

Name: deoB [H]

Synonym: YPK_3625

Alternate gene names: 170025840

Gene position: 4001165-3999942 (Counterclockwise)

Preceding gene: 170025841

Following gene: 170025839

Centisome position: 85.32

GC content: 51.31

Gene sequence:

>1224_bases
ATGAAACGTACATTTATTATGGTATTAGATTCTTTTGGTATTGGTGCTAGTGCAGATGCCAAAAAATTTGGTGACGAAGG
CGCAGATACATTAGGTCATATCGCAGAAGCCTGTGCGCGTGGTGAAGCCAACGTGGGCCGTAGCGGCCCGTTGACACTGC
CTAACCTGAGCCGTTTAGGGCTGGGTAAAGCGGCAGAAGAATCAACCGGTACCTTCCCCGTTGGCTTGGATAAGAACGCG
GATATTATTGGTGCTTATGGCTACGCCAGCGAGCTGTCTTCTGGTAAAGATACGCCGTCAGGTCACTGGGAAATTGCGGG
TGTCCCCGTCTTGTTCGATTGGGGATATTTCAGCGATGTGGAAAACAGCTTTCCACAGGAATTGCTGGATAAACTGGTAA
AACGCGCCAATCTGCCGGGCTATTTGGGTAACTGCCACTCTTCCGGTACGGTGATCCTTGACCAACTGGGTGAGGAGCAT
ATGAAAACCGGGAAGCCGATTTTCTACACCTCTGCTGACTCCGTATTCCAGATTGCCTGCCACGAAGAGACCTTTGGTCT
GGATCGTTTGTATGAGCTGTGCGAAATTGCCCGTGAAGAGCTGACCGACGGTGGCTATAACATTGGTCGTGTGATTGCAC
GTCCGTTTATCGGCGACAAACCGGGTCACTTCCAACGCACGGGTAATCGTCATGATCTGGCGGTTGAACCCCCTGCGCCG
ACCATGCTGAAAAAACTGGTTGATGAGAAGGGCGGTGAAGTGGTGTCTATCGGTAAAATTGCCGATATTTATGCACAGGT
TGGTATCACACAGAAAGTGAAGGCCACGGGGCTGGATGCGTTGTTCGATGCCACGATAGAAGAGATGAAAAAAGCGGGCG
ATAACACCATCGTTTTCACTAACTTTGTTGATTTTGACTCGTCTTACGGCCACCGCCGTGATGTTGCTGGTTATGCCGCC
GCGTTAGAACTATTCGACCGCCGCCTACCGGAATTGATGGCACTGGTCAAAGAAGATGACATCCTGATCCTGACCGCTGA
CCACGGTTGTGACCCAACCTGGCCGGGCACTGACCATACCCGTGAGCACATTCCGGTTTTGGTTTACGGCCCGAAAGTTA
AACCGGGTTCATTGGGGCATCGTGAGACCTTTGCCGATATCGGGCAGACAGTTGCGGCGTATTTTGGGTTGTCGCCAATG
GATTACGGCAAGAACATGCTTTAG

Upstream 100 bases:

>100_bases
TACAGCGCCCAAACGGATCGGCAATTAATTATGAATGTGGGGTGGTGGAGCGAATGAATATTCGCCGCCCCCAGAGCGTG
AATCCACGCAGGAGAGAGCA

Downstream 100 bases:

>100_bases
CGCACAAGGCTGAGCTGAGCGAGTCAGTTCGGCGATTAACATTTCAATTAGGTTAAGGCCTCTATTAGGTTAAAACCGCA
ATTAAGTTAACATATTAATT

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MKRTFIMVLDSFGIGASADAKKFGDEGADTLGHIAEACARGEANVGRSGPLTLPNLSRLGLGKAAEESTGTFPVGLDKNA
DIIGAYGYASELSSGKDTPSGHWEIAGVPVLFDWGYFSDVENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDRLYELCEIAREELTDGGYNIGRVIARPFIGDKPGHFQRTGNRHDLAVEPPAP
TMLKKLVDEKGGEVVSIGKIADIYAQVGITQKVKATGLDALFDATIEEMKKAGDNTIVFTNFVDFDSSYGHRRDVAGYAA
ALELFDRRLPELMALVKEDDILILTADHGCDPTWPGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTVAAYFGLSPM
DYGKNML

Sequences:

>Translated_407_residues
MKRTFIMVLDSFGIGASADAKKFGDEGADTLGHIAEACARGEANVGRSGPLTLPNLSRLGLGKAAEESTGTFPVGLDKNA
DIIGAYGYASELSSGKDTPSGHWEIAGVPVLFDWGYFSDVENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDRLYELCEIAREELTDGGYNIGRVIARPFIGDKPGHFQRTGNRHDLAVEPPAP
TMLKKLVDEKGGEVVSIGKIADIYAQVGITQKVKATGLDALFDATIEEMKKAGDNTIVFTNFVDFDSSYGHRRDVAGYAA
ALELFDRRLPELMALVKEDDILILTADHGCDPTWPGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTVAAYFGLSPM
DYGKNML
>Mature_407_residues
MKRTFIMVLDSFGIGASADAKKFGDEGADTLGHIAEACARGEANVGRSGPLTLPNLSRLGLGKAAEESTGTFPVGLDKNA
DIIGAYGYASELSSGKDTPSGHWEIAGVPVLFDWGYFSDVENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDRLYELCEIAREELTDGGYNIGRVIARPFIGDKPGHFQRTGNRHDLAVEPPAP
TMLKKLVDEKGGEVVSIGKIADIYAQVGITQKVKATGLDALFDATIEEMKKAGDNTIVFTNFVDFDSSYGHRRDVAGYAA
ALELFDRRLPELMALVKEDDILILTADHGCDPTWPGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTVAAYFGLSPM
DYGKNML

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=407, Percent_Identity=85.995085995086, Blast_Score=733, Evalue=0.0,
Organism=Escherichia coli, GI1789781, Length=441, Percent_Identity=28.3446712018141, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 44092; Mature: 44092

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTFIMVLDSFGIGASADAKKFGDEGADTLGHIAEACARGEANVGRSGPLTLPNLSRLG
CCCEEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
LGKAAEESTGTFPVGLDKNADIIGAYGYASELSSGKDTPSGHWEIAGVPVLFDWGYFSDV
CCCCCCCCCCCEEECCCCCCCEEEECCCHHHHCCCCCCCCCCEEEECCEEEEECCCHHHH
ENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC
HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDRLYELCEIAREELTDGGYNIGRVIARPFIGDKPGHFQRTGNRHDLAVEPPAP
CCHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCH
TMLKKLVDEKGGEVVSIGKIADIYAQVGITQKVKATGLDALFDATIEEMKKAGDNTIVFT
HHHHHHHHHCCCCEEEEHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHCCCCEEEEE
NFVDFDSSYGHRRDVAGYAAALELFDRRLPELMALVKEDDILILTADHGCDPTWPGTDHT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REHIPVLVYGPKVKPGSLGHRETFADIGQTVAAYFGLSPMDYGKNML
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCC
>Mature Secondary Structure
MKRTFIMVLDSFGIGASADAKKFGDEGADTLGHIAEACARGEANVGRSGPLTLPNLSRLG
CCCEEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
LGKAAEESTGTFPVGLDKNADIIGAYGYASELSSGKDTPSGHWEIAGVPVLFDWGYFSDV
CCCCCCCCCCCEEECCCCCCCEEEECCCHHHHCCCCCCCCCCEEEECCEEEEECCCHHHH
ENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC
HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDRLYELCEIAREELTDGGYNIGRVIARPFIGDKPGHFQRTGNRHDLAVEPPAP
CCHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCH
TMLKKLVDEKGGEVVSIGKIADIYAQVGITQKVKATGLDALFDATIEEMKKAGDNTIVFT
HHHHHHHHHCCCCEEEEHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHCCCCEEEEE
NFVDFDSSYGHRRDVAGYAAALELFDRRLPELMALVKEDDILILTADHGCDPTWPGTDHT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REHIPVLVYGPKVKPGSLGHRETFADIGQTVAAYFGLSPMDYGKNML
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA