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The map label for this gene is hcp1 [H]

Identifier: 170025778

GI number: 170025778

Start: 3925548

End: 3926066

Strand: Reverse

Name: hcp1 [H]

Synonym: YPK_3563

Alternate gene names: 170025778

Gene position: 3926066-3925548 (Counterclockwise)

Preceding gene: 170025779

Following gene: 170025777

Centisome position: 83.72

GC content: 48.55

Gene sequence:

>519_bases
ATGGCAGCTTTAGTCGATTACTTTCTCCATATCGAAGGTGTAGATGGTGAGTCTCCCGATCAGCAGTATAACGGATGGAT
CCAAGTACAGGCTTGGCAATGGGCGGAGGAGAATGCGGGGCGCTGGGGGCTAGGTGGTGGTGGTGGTTCTGGGAAAGTCG
AAATGAAGGACTTCGAATTTCGCATGGTGAGTAACAAAGCATCACCAAAACTATTTTTGATGTGTGCCATCGGTGAACAC
ATTCCGCAGGCCAAGTTGGTGTGTCGTAAATCAGGTCAAGGTCAACAAGACTTCCTGATTGTTACCTTCAGTAACTGTCT
GGTGTCCTCCTTTAAAACTGTCGGCAACATGCCTCTTGGTAAAGGGGACGCAGTATTCACCGACACTGTGCTGCCAACGG
ATGCCATCAGCCTTAACTTTGCACGTATCGAAGTGGAATACAAAGAGCAGCAACCTGATGGCTCGATGGGGGCCGTGATT
AAGGCTGGTTACGATCTGAAATTGAACAACCGTATTTAA

Upstream 100 bases:

>100_bases
GCCGAAATTAAATAGGAAAGTACATTTTTAATGAGGCAACTTTGAGTTGCCGAATACTGATTTAACCCAACTTTAATGAC
ATTAATTCAGGAGTGAAAAA

Downstream 100 bases:

>100_bases
GTCAGAAATGCATTAGGACTGCTCTCGCGAGTTAGGAGAGCAGTCTTCCAAACTGGATTGGGGAGGGCTAATTATGGATA
TTTCAGCACCGATACTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MAALVDYFLHIEGVDGESPDQQYNGWIQVQAWQWAEENAGRWGLGGGGGSGKVEMKDFEFRMVSNKASPKLFLMCAIGEH
IPQAKLVCRKSGQGQQDFLIVTFSNCLVSSFKTVGNMPLGKGDAVFTDTVLPTDAISLNFARIEVEYKEQQPDGSMGAVI
KAGYDLKLNNRI

Sequences:

>Translated_172_residues
MAALVDYFLHIEGVDGESPDQQYNGWIQVQAWQWAEENAGRWGLGGGGGSGKVEMKDFEFRMVSNKASPKLFLMCAIGEH
IPQAKLVCRKSGQGQQDFLIVTFSNCLVSSFKTVGNMPLGKGDAVFTDTVLPTDAISLNFARIEVEYKEQQPDGSMGAVI
KAGYDLKLNNRI
>Mature_171_residues
AALVDYFLHIEGVDGESPDQQYNGWIQVQAWQWAEENAGRWGLGGGGGSGKVEMKDFEFRMVSNKASPKLFLMCAIGEHI
PQAKLVCRKSGQGQQDFLIVTFSNCLVSSFKTVGNMPLGKGDAVFTDTVLPTDAISLNFARIEVEYKEQQPDGSMGAVIK
AGYDLKLNNRI

Specific function: Required for assembly of the protein secretion apparatus HSI-I. Actively secreted during chronic infection of cystic fibrosis patients [H]

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 18869; Mature: 18737

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALVDYFLHIEGVDGESPDQQYNGWIQVQAWQWAEENAGRWGLGGGGGSGKVEMKDFEF
CCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCEECCCCCCCCCEEEEEEEEE
RMVSNKASPKLFLMCAIGEHIPQAKLVCRKSGQGQQDFLIVTFSNCLVSSFKTVGNMPLG
EEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHHHHHCCCCCC
KGDAVFTDTVLPTDAISLNFARIEVEYKEQQPDGSMGAVIKAGYDLKLNNRI
CCCEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEECCCEEEECCCC
>Mature Secondary Structure 
AALVDYFLHIEGVDGESPDQQYNGWIQVQAWQWAEENAGRWGLGGGGGSGKVEMKDFEF
CCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCEECCCCCCCCCEEEEEEEEE
RMVSNKASPKLFLMCAIGEHIPQAKLVCRKSGQGQQDFLIVTFSNCLVSSFKTVGNMPLG
EEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHHHHHCCCCCC
KGDAVFTDTVLPTDAISLNFARIEVEYKEQQPDGSMGAVIKAGYDLKLNNRI
CCCEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEECCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]