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The map label for this gene is ycaD [C]

Identifier: 170025592

GI number: 170025592

Start: 3704749

End: 3706089

Strand: Direct

Name: ycaD [C]

Synonym: YPK_3377

Alternate gene names: 170025592

Gene position: 3704749-3706089 (Clockwise)

Preceding gene: 170025582

Following gene: 170025593

Centisome position: 79.0

GC content: 49.81

Gene sequence:

>1341_bases
GTGAAAAAAATTTTCAATACCTTCTTCCCACTTTATAGCGCAACGGTGTTGATGCTATTAGGCTCAGGTTTGTTGACCAC
CTATATTTCGCTACGTTTAACGGCAATCAACGTTTCAGCACTATTAATCGGAGCCATCATTGCCGCTAACTACATCGGTC
TGGTTATCGGTGGCAAAGTCGGTCATTTCCTGATCGCCAGAGTCGGCCATATTCGTGCTTATGTTGCCTGTGCCGGTATT
ATTACCGCGGCCGTATTAAGTCATGGACTTACTGAATATATCCCTGCGTGGGTAGTTCTGCGCTTGATTATTGGCCTCTG
CATGATGTGCCAGTTTATGGTGCTGGAAAGCTGGCTTAATGATCAAGCGGCATCGAACCAGCGTGGCACGGTATTCGGTT
TTTATATGGCGGCAACCTATGCGGGGCTAGCCTTGGGCCAGGTGGTGCTTATGTTTCAGCCCGCGCTGGGGCTGATTACT
TTAATGGTTATTGCCCTCTTTTTTGCGCTCTGTTTGGTGCCTGTTGCGCTGACCACCCGCAGTAATGCTCAGCAAATGTC
CCCGGCACCGATGGAGCTGAAATTTTTTGTCAGTTCGATCCCCAAAATACTGGCATCAACATTGGTCATCGGCATGATTG
TCGGCTCGTTTTATGGCTTGGCACCGGTTTATAGCAGCTTGCAATCCCTCTCAACGCAGGAGACTGGCTTGTTTATGGCA
TTGTCTATCTTCGCCGGCCTTGTCGCCCAGTTTCCACTCAGTTGGTTATCAGACCGCTATAACCGGACACAATTGATCCG
AATTAACGCTCTCTTACTGGCATTAACCGCATTACCGCTGGCACTAATACCCCATATTTCTTTCCGATTTCTGCTCAGTT
TGGGCTTTGTCGTCAGTCTGTTGCAGTTCACGCTTTATCCGCTGGTCGTCGCACTCGCCAATGACCTGATTGAACCAGAA
AGGCGGGTCTCACTCGCGGCGTGTTTATTAATGTCATTTGGTGTCGGTGCCAGTATTGGGCCTCTCGTCGTAGGCGCGCT
GATGGCACCATTGGGAGGGAATATTCTGTATGCGTTCTTTTCTCTCTGCGGCTTGGGCCTGATCGCGCTAAGCAGAACCG
TAAAACAGGACCAAGACGAATTTGTTAATGATGCGCCAGTACCTCATATAGCGATCCCCGATTGCCTGGTCAGTTCACCG
CTATCATCTGCATTGAACCCCAGCTTTGACGAGCAGATGATCCAGAACGTTATGCCACCACCGGAGCAACCCGCAACCAT
TAACACCCCGGCGGACAGCCTATCTGATCCTGATACAACGCCATCACCTCATTCACAATGA

Upstream 100 bases:

>100_bases
TAAAAAATCATGATCGTCTTTTTTATCAACAGAATAAGAGGCGACAGTGACATCTGCGGTGCCAGTAATTTATCCGCGAT
GAGGAACTAAGGACAATAGC

Downstream 100 bases:

>100_bases
TATGATGTCACAATGATGTCATGGCGCTGGGTTACACACCGGATCTGCGTCACAAAATAATATGATGCCCATCAAGGTAA
GAGCCGTTTTTCCTCAGTAC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MKKIFNTFFPLYSATVLMLLGSGLLTTYISLRLTAINVSALLIGAIIAANYIGLVIGGKVGHFLIARVGHIRAYVACAGI
ITAAVLSHGLTEYIPAWVVLRLIIGLCMMCQFMVLESWLNDQAASNQRGTVFGFYMAATYAGLALGQVVLMFQPALGLIT
LMVIALFFALCLVPVALTTRSNAQQMSPAPMELKFFVSSIPKILASTLVIGMIVGSFYGLAPVYSSLQSLSTQETGLFMA
LSIFAGLVAQFPLSWLSDRYNRTQLIRINALLLALTALPLALIPHISFRFLLSLGFVVSLLQFTLYPLVVALANDLIEPE
RRVSLAACLLMSFGVGASIGPLVVGALMAPLGGNILYAFFSLCGLGLIALSRTVKQDQDEFVNDAPVPHIAIPDCLVSSP
LSSALNPSFDEQMIQNVMPPPEQPATINTPADSLSDPDTTPSPHSQ

Sequences:

>Translated_446_residues
MKKIFNTFFPLYSATVLMLLGSGLLTTYISLRLTAINVSALLIGAIIAANYIGLVIGGKVGHFLIARVGHIRAYVACAGI
ITAAVLSHGLTEYIPAWVVLRLIIGLCMMCQFMVLESWLNDQAASNQRGTVFGFYMAATYAGLALGQVVLMFQPALGLIT
LMVIALFFALCLVPVALTTRSNAQQMSPAPMELKFFVSSIPKILASTLVIGMIVGSFYGLAPVYSSLQSLSTQETGLFMA
LSIFAGLVAQFPLSWLSDRYNRTQLIRINALLLALTALPLALIPHISFRFLLSLGFVVSLLQFTLYPLVVALANDLIEPE
RRVSLAACLLMSFGVGASIGPLVVGALMAPLGGNILYAFFSLCGLGLIALSRTVKQDQDEFVNDAPVPHIAIPDCLVSSP
LSSALNPSFDEQMIQNVMPPPEQPATINTPADSLSDPDTTPSPHSQ
>Mature_446_residues
MKKIFNTFFPLYSATVLMLLGSGLLTTYISLRLTAINVSALLIGAIIAANYIGLVIGGKVGHFLIARVGHIRAYVACAGI
ITAAVLSHGLTEYIPAWVVLRLIIGLCMMCQFMVLESWLNDQAASNQRGTVFGFYMAATYAGLALGQVVLMFQPALGLIT
LMVIALFFALCLVPVALTTRSNAQQMSPAPMELKFFVSSIPKILASTLVIGMIVGSFYGLAPVYSSLQSLSTQETGLFMA
LSIFAGLVAQFPLSWLSDRYNRTQLIRINALLLALTALPLALIPHISFRFLLSLGFVVSLLQFTLYPLVVALANDLIEPE
RRVSLAACLLMSFGVGASIGPLVVGALMAPLGGNILYAFFSLCGLGLIALSRTVKQDQDEFVNDAPVPHIAIPDCLVSSP
LSSALNPSFDEQMIQNVMPPPEQPATINTPADSLSDPDTTPSPHSQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=344, Percent_Identity=26.1627906976744, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 47745; Mature: 47745

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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CCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA