Click here to switch to the map view.

The map label for this gene is ycbZ [H]

Identifier: 170024858

GI number: 170024858

Start: 2888420

End: 2890042

Strand: Direct

Name: ycbZ [H]

Synonym: YPK_2633

Alternate gene names: 170024858

Gene position: 2888420-2890042 (Clockwise)

Preceding gene: 170024856

Following gene: 170024859

Centisome position: 61.59

GC content: 51.45

Gene sequence:

>1623_bases
ATGACGCTGTTCTGTCATCCGCAATCTCAACCGCGGTTTATGCTAATCAAAGCACAGGAGAGTACCGACTATCTGGCATT
GATCGCACAAGCGGTTAAAGCGCTACAACCGGAGGCCTCCAACCTGCTTGGTGGCGATTATCTGGTCCATGGCCACCACG
TCACCTGGCAATCAGCACAGCACGGTGATGAACGGTTTGCTGCGCAATCAACCTGTCTCTATCAAGAATGGGTCGAGCCG
GAACAGTTGTTTGGCTGTGTCAGGATGTATAAAGATCAAATTACGCTGCAACCGGGTTTAGTTCATCAGGTAAATGGTGG
TGTATTGATCTTGTCGGTACGGGCCTTGCAAGCTCAGCCATTGATGTGGCTGCGTTTGAAGCAAATGATAGTTCAACAAC
GCTTTGATTGGCTCTCTACCGATGAAACCCGCCCGCTGCCAGTGCATATTCCCTCCATGCCACTGGACCTGCGTTTGATT
CTGGTTGGTGACCGTTTAGGGCTTGCCGATTTCCATGATATGGAACCCGAGCTAGGTGATCTGGCGATTTATGGTGAGTT
CGAGGCAGAACTCCCCCTGGTAGATATCGAAGGCATGGCTCTATGGTGCGGTTACATCAACACCCTATTGCAACAAAAGC
AGCTCCCTGCCTTATCTGCCGATGCCTGGCCGGTCCTGTTCCGCCAAGCCGTGCGTTACAGTGGCGACCAAGGCAGCCTG
CCGCTCTGCCCGCAATGGCTTACTCAGCAGCTCGCAGAAGCGGCGCTTTATGCTGAAAATGACACCATCTCAGCTAACGC
GCTAGAAGCCGCACTGAATGCCCGAAATTGGCGGCAAAATTATCTTGCCGAACGGATGCAAGATGAGATCGAGCTGGGGC
AAATTCTGGTTGAGACTGAAGGGCACGTTGTTGGCCAGATTAATGCCTTATCCGTGCTGGAATATCCCGGTCACCCTCAC
GCGTTCGGCGAACCCGCACGGATCAGTTGTGTGGTTCATTTAGGCGATGGCGAATTTGTTGACGTTGAACGTAAAGCGGA
ATTGGGCGGTAATATTCATGCTAAAGGCATGATGATTATGCAGGCATTCTTGATGTCTGAATTGGAACTTGACCAACCAC
TGCCATTCTCCGCATCCATTGTGTTTGAGCAGTCCTACGGTGAGGTTGATGGCGATAGTGCATCACTAGCAGAGCTTTGT
GCGCTGGTCAGTGCCCTTTCACAGCAGCCTATCAATCAGCAAATTGCGGTTACAGGCTCCGTTGACCAATTTGGTAACGT
ACAACCTATTGGTGGCGTGAACGAAAAAATTGAAGGTTTCTTCGAAACTTGCCAACGCCGTGGTTTGACGGGCAATCAGG
GGGTGATTTTACCTACCACGAATGTTCGTCACTTGTGCCTGAATCAAGCAGTGGTTGAAGCGGTACAGAAAGGTCAATTC
CACCTGTGGGCTGTCGATACCGTGGCTGAAGCGCTACCATTATTGACTGGGGTCACTTATGACGATGAGCAGCAACCCAG
CCTGTTAGGCGCTATCCAGGAGCGTATCGCACAGATAAACCCACAGGATAAACGCCGCTGGCCATGGCCATTACGCTGGC
TAAACTGGTTCAACCAGGGCTAA

Upstream 100 bases:

>100_bases
ACTGCTGCCGAACACAACGCCATATGAAGCGTTATTTGCTACTGCCTCCCAATTGGAGCCTGTTGCTTTTTCAGCCTATC
AGCCCCGGCTAGAGAATGGG

Downstream 100 bases:

>100_bases
TCGGACTTGCTCAGCGTACAGCTGTACGCTATTCTGCGCACTTCACTAACATAAGGCTTACTGAGAACATGGTAGATAAA
CGCGAATCCTATACAAAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 540; Mature: 539

Protein sequence:

>540_residues
MTLFCHPQSQPRFMLIKAQESTDYLALIAQAVKALQPEASNLLGGDYLVHGHHVTWQSAQHGDERFAAQSTCLYQEWVEP
EQLFGCVRMYKDQITLQPGLVHQVNGGVLILSVRALQAQPLMWLRLKQMIVQQRFDWLSTDETRPLPVHIPSMPLDLRLI
LVGDRLGLADFHDMEPELGDLAIYGEFEAELPLVDIEGMALWCGYINTLLQQKQLPALSADAWPVLFRQAVRYSGDQGSL
PLCPQWLTQQLAEAALYAENDTISANALEAALNARNWRQNYLAERMQDEIELGQILVETEGHVVGQINALSVLEYPGHPH
AFGEPARISCVVHLGDGEFVDVERKAELGGNIHAKGMMIMQAFLMSELELDQPLPFSASIVFEQSYGEVDGDSASLAELC
ALVSALSQQPINQQIAVTGSVDQFGNVQPIGGVNEKIEGFFETCQRRGLTGNQGVILPTTNVRHLCLNQAVVEAVQKGQF
HLWAVDTVAEALPLLTGVTYDDEQQPSLLGAIQERIAQINPQDKRRWPWPLRWLNWFNQG

Sequences:

>Translated_540_residues
MTLFCHPQSQPRFMLIKAQESTDYLALIAQAVKALQPEASNLLGGDYLVHGHHVTWQSAQHGDERFAAQSTCLYQEWVEP
EQLFGCVRMYKDQITLQPGLVHQVNGGVLILSVRALQAQPLMWLRLKQMIVQQRFDWLSTDETRPLPVHIPSMPLDLRLI
LVGDRLGLADFHDMEPELGDLAIYGEFEAELPLVDIEGMALWCGYINTLLQQKQLPALSADAWPVLFRQAVRYSGDQGSL
PLCPQWLTQQLAEAALYAENDTISANALEAALNARNWRQNYLAERMQDEIELGQILVETEGHVVGQINALSVLEYPGHPH
AFGEPARISCVVHLGDGEFVDVERKAELGGNIHAKGMMIMQAFLMSELELDQPLPFSASIVFEQSYGEVDGDSASLAELC
ALVSALSQQPINQQIAVTGSVDQFGNVQPIGGVNEKIEGFFETCQRRGLTGNQGVILPTTNVRHLCLNQAVVEAVQKGQF
HLWAVDTVAEALPLLTGVTYDDEQQPSLLGAIQERIAQINPQDKRRWPWPLRWLNWFNQG
>Mature_539_residues
TLFCHPQSQPRFMLIKAQESTDYLALIAQAVKALQPEASNLLGGDYLVHGHHVTWQSAQHGDERFAAQSTCLYQEWVEPE
QLFGCVRMYKDQITLQPGLVHQVNGGVLILSVRALQAQPLMWLRLKQMIVQQRFDWLSTDETRPLPVHIPSMPLDLRLIL
VGDRLGLADFHDMEPELGDLAIYGEFEAELPLVDIEGMALWCGYINTLLQQKQLPALSADAWPVLFRQAVRYSGDQGSLP
LCPQWLTQQLAEAALYAENDTISANALEAALNARNWRQNYLAERMQDEIELGQILVETEGHVVGQINALSVLEYPGHPHA
FGEPARISCVVHLGDGEFVDVERKAELGGNIHAKGMMIMQAFLMSELELDQPLPFSASIVFEQSYGEVDGDSASLAELCA
LVSALSQQPINQQIAVTGSVDQFGNVQPIGGVNEKIEGFFETCQRRGLTGNQGVILPTTNVRHLCLNQAVVEAVQKGQFH
LWAVDTVAEALPLLTGVTYDDEQQPSLLGAIQERIAQINPQDKRRWPWPLRWLNWFNQG

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=533, Percent_Identity=60.4127579737336, Blast_Score=684, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.-

Molecular weight: Translated: 60236; Mature: 60105

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLFCHPQSQPRFMLIKAQESTDYLALIAQAVKALQPEASNLLGGDYLVHGHHVTWQSAQ
CEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHCCCCCEEEECCEEEECCCC
HGDERFAAQSTCLYQEWVEPEQLFGCVRMYKDQITLQPGLVHQVNGGVLILSVRALQAQP
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEECCCCEEECCCCEEEEEEEECCCCC
LMWLRLKQMIVQQRFDWLSTDETRPLPVHIPSMPLDLRLILVGDRLGLADFHDMEPELGD
HHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
LAIYGEFEAELPLVDIEGMALWCGYINTLLQQKQLPALSADAWPVLFRQAVRYSGDQGSL
EEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC
PLCPQWLTQQLAEAALYAENDTISANALEAALNARNWRQNYLAERMQDEIELGQILVETE
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
GHVVGQINALSVLEYPGHPHAFGEPARISCVVHLGDGEFVDVERKAELGGNIHAKGMMIM
CCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEHHHHCCCCEEHHHHHHH
QAFLMSELELDQPLPFSASIVFEQSYGEVDGDSASLAELCALVSALSQQPINQQIAVTGS
HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
VDQFGNVQPIGGVNEKIEGFFETCQRRGLTGNQGVILPTTNVRHLCLNQAVVEAVQKGQF
HHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCE
HLWAVDTVAEALPLLTGVTYDDEQQPSLLGAIQERIAQINPQDKRRWPWPLRWLNWFNQG
EEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TLFCHPQSQPRFMLIKAQESTDYLALIAQAVKALQPEASNLLGGDYLVHGHHVTWQSAQ
EEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHCCCCCEEEECCEEEECCCC
HGDERFAAQSTCLYQEWVEPEQLFGCVRMYKDQITLQPGLVHQVNGGVLILSVRALQAQP
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEECCCCEEECCCCEEEEEEEECCCCC
LMWLRLKQMIVQQRFDWLSTDETRPLPVHIPSMPLDLRLILVGDRLGLADFHDMEPELGD
HHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
LAIYGEFEAELPLVDIEGMALWCGYINTLLQQKQLPALSADAWPVLFRQAVRYSGDQGSL
EEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC
PLCPQWLTQQLAEAALYAENDTISANALEAALNARNWRQNYLAERMQDEIELGQILVETE
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
GHVVGQINALSVLEYPGHPHAFGEPARISCVVHLGDGEFVDVERKAELGGNIHAKGMMIM
CCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEHHHHCCCCEEHHHHHHH
QAFLMSELELDQPLPFSASIVFEQSYGEVDGDSASLAELCALVSALSQQPINQQIAVTGS
HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
VDQFGNVQPIGGVNEKIEGFFETCQRRGLTGNQGVILPTTNVRHLCLNQAVVEAVQKGQF
HHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCE
HLWAVDTVAEALPLLTGVTYDDEQQPSLLGAIQERIAQINPQDKRRWPWPLRWLNWFNQG
EEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]