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The map label for this gene is rnfD [H]

Identifier: 170024245

GI number: 170024245

Start: 2238649

End: 2239743

Strand: Direct

Name: rnfD [H]

Synonym: YPK_2010

Alternate gene names: 170024245

Gene position: 2238649-2239743 (Clockwise)

Preceding gene: 170024243

Following gene: 170024246

Centisome position: 47.74

GC content: 50.87

Gene sequence:

>1095_bases
ATGAAATTCAGGCCTGTAACACCGACCCAGAACAAAGGGTTGCAGATTGCCAGTTCCCCTTTTACCCACAATCAACGCAG
TACCCGTCGTATTATGCTGCTGGTTATTCTGGCCTGTATTCCGGGGATTATCGCCCAGACTTACTTCTTCGGTTATGGCA
GCCTGATTCAAGTCATGCTGGCTATGATCACTGCACTGTTGGCCGAAGGTGCCGTATTGCAGTTACGTAAACAACCCGTC
ATGGCGCGGTTACAAGATAACTCTGCCCTGCTGACTGCCTTATTGTTGGGGATAAGCCTCCCCCCATTGGCCCCCTGGTG
GATGATCGTGCTGGGCACGCTATTTGCTATTGTCATTGCCAAACAACTCTATGGTGGCCTAGGGCAGAACCCGTTTAACC
CGGCAATGGTCGGTTATGTTGTGCTCCTTATTTCATTTCCGGTACAAATGACCAGTTGGCTGCCACCGCTACCGTTGCAA
GGAACGTCGGTGGGATTCTATGACAGTCTCTTAACCATTTTCACCGGTTATACCCACAGTGGTGAGAATATTCATCAGCT
CCAAGTTGGCTATGACGGCATCAGCCAAGCGACGCCACTGGATACGTTTAAGACCTCGCTACGTTCACAGCCAGCAGATC
AAATTCTGCAACAGCCCATATTTGGCGGTGTGCTGGCGGGTTTAGGCTGGCAATGGGTTAATACCGGCTTTCTGGTTGGC
GGCTTATTGCTACTGTGGCGTAAAGCTATTCACTGGCATATTCCCGTGAGCTTCCTGCTCGCCTTAGGAGGTTGTGCCGC
AGTGAGCTGGATGATTGCTCCACAAAGCTTTGCCTCACCAATGCTACATTTGTTCTCCGGTGCCACCATGTTAGGTGCAT
TTTTCATTGCTACCGATCCTGTCAGTGCCTCTACAACACCCCGTGGCCGCCTGATATTTGGTGCCCTCATTGGTATTCTG
GTGTGGCTAATCCGGGTATATGGCGGCTATCCGGATGGTGTTGCTTTTGCCGTGTTGCTCGCCAATATTACAGTTCCGTT
GATTGACCACTATACCCAACCTCGGGTCTATGGCCATAAAAGCGGGCACAAATAA

Upstream 100 bases:

>100_bases
CCTAACGGCTACGTGTATTGACGCCAGCAAGGATGACTTGCCCACGCGATCCCTACGTTTGAAAGCCCTGATAAGTATTC
TGACATATGGTTGCAATTTC

Downstream 100 bases:

>100_bases
GGAGCCGTTATGCTAAAAACAATGAGGCGTCACGGCATCACTCTCGCACTGTTTGCTGCCGGTGCCACAGGGTTAACTGC
GGTTGTTAACTCACTGACTG

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MKFRPVTPTQNKGLQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVLQLRKQPV
MARLQDNSALLTALLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWLPPLPLQ
GTSVGFYDSLLTIFTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNTGFLVG
GLLLLWRKAIHWHIPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDPVSASTTPRGRLIFGALIGIL
VWLIRVYGGYPDGVAFAVLLANITVPLIDHYTQPRVYGHKSGHK

Sequences:

>Translated_364_residues
MKFRPVTPTQNKGLQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVLQLRKQPV
MARLQDNSALLTALLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWLPPLPLQ
GTSVGFYDSLLTIFTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNTGFLVG
GLLLLWRKAIHWHIPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDPVSASTTPRGRLIFGALIGIL
VWLIRVYGGYPDGVAFAVLLANITVPLIDHYTQPRVYGHKSGHK
>Mature_364_residues
MKFRPVTPTQNKGLQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVLQLRKQPV
MARLQDNSALLTALLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWLPPLPLQ
GTSVGFYDSLLTIFTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNTGFLVG
GLLLLWRKAIHWHIPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDPVSASTTPRGRLIFGALIGIL
VWLIRVYGGYPDGVAFAVLLANITVPLIDHYTQPRVYGHKSGHK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=349, Percent_Identity=69.054441260745, Blast_Score=499, Evalue=1e-143,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 39550; Mature: 39550

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFRPVTPTQNKGLQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVML
CCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMITALLAEGAVLQLRKQPVMARLQDNSALLTALLLGISLPPLAPWWMIVLGTLFAIVIA
HHHHHHHHCCHHHHHHHCCHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
KQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTIFTGYTHS
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC
GENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNTGFLVG
CCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHCHHHHHHHHHCCHHHHHHHHHHH
GLLLLWRKAIHWHIPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDP
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCC
VSASTTPRGRLIFGALIGILVWLIRVYGGYPDGVAFAVLLANITVPLIDHYTQPRVYGHK
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
SGHK
CCCC
>Mature Secondary Structure
MKFRPVTPTQNKGLQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVML
CCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMITALLAEGAVLQLRKQPVMARLQDNSALLTALLLGISLPPLAPWWMIVLGTLFAIVIA
HHHHHHHHCCHHHHHHHCCHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
KQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTIFTGYTHS
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC
GENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNTGFLVG
CCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHCHHHHHHHHHCCHHHHHHHHHHH
GLLLLWRKAIHWHIPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDP
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCC
VSASTTPRGRLIFGALIGILVWLIRVYGGYPDGVAFAVLLANITVPLIDHYTQPRVYGHK
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
SGHK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]