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The map label for this gene is rnfC [H]

Identifier: 170024243

GI number: 170024243

Start: 2235066

End: 2237162

Strand: Direct

Name: rnfC [H]

Synonym: YPK_2008

Alternate gene names: 170024243

Gene position: 2235066-2237162 (Clockwise)

Preceding gene: 170024242

Following gene: 170024245

Centisome position: 47.66

GC content: 53.12

Gene sequence:

>2097_bases
ATGTTTAAGCTGTTTACTGCCCGCCAACATGACAAGATCTGGGATTTCGATGGCGGTATCCACCCACCAGAAATGAAACT
GCAATCAAGCACGGTCCCCATGCGTATCGCGCCTTTGCCAGATCAATTAATTATCCCTTTGCAACAGCACTTGGGGCCGG
AGGGTGAACTGCGGGTACGGGCGGGTGAGCAAGTATTGAAGGGGCAGCCACTGACCGTTGGCCGTGGCCGTACAGTTCCA
GTTCATGCCCCTACTTCAGGGATGATCACTGCGATTGCTCCACATACCACCGCCCACCCATCCGGCTTAGCTGAACTTTG
CGTCCATATTACCCCTGATGGTGAAGATCGCTGGCGTGAACAACAGCCGTGGGCTGACTATCGCCAGCGCGATAAAATGG
CCCTGCTTGACCGTATTCACCAAGCAGGCATTGCCGGTTTGGGGGGCGCAGGTTTCCCAACTGCCAGCAAGCTGCAAGGG
GGGTTGAATGGGATTATCACGTTAATCATCAACGCGGCGGAATGCGAACCCTATATCACTGCTGATGATCGTTTGATGCA
AGAGCATGCTGATGAAGTCATAACGGGCATCCATATTTTACGGCATTTGTTGCAGCCTCAGCAGGTGCTGATTGGGATAG
AAGATAATAAGCCAGAGGCGATTGCGGCACTGCAACGGGCATTACGTGGGCAAGACGGCATTCACTTACGTGTTGTCCCC
ACCAAGTACCCATCAGGGGGAGCCAAGCAATTAACCAAGATTCTGACGGGCAAAGAAGTCCCCTTTGGCAAGCATTCGTC
ATCCATTGGTGTATTAATGCAAAACGTCGGTACTGTCGTGGCTATCAAACGGGCAGTTATCGACGATGAACCACTGATTG
AGCGGGTGGTGACATTAACCGGTGATGCCCTGTCATCGCCTGGAAACTTTTGGGCCAGAATCGGCACACCAGTACTGTAT
TTACTTAAATTGGCCGGTTTCAAGCCTCAAAACCCGCCAATGGTGATTATGGGGGGGCCATTGATGGGCTTTACTTTGCC
CAGTTTGGATGTCCCCATCGTTAAAATCAGTAACTGCATTTTAGCGCCCGCTGAAACGGAAATGGGCCTATCTGAACCAG
AGCAATCCTGTATCCGTTGCGGTTTATGTGTTGACGCCTGCCCTGCAGGATTATTGCCTCAACAACTCTACTGGTTTAGC
CGTGGTGAAGAACACGAAAAGGCCCGCAATCATAATTTGTTCGATTGTATAGAATGCGGTGCCTGCGCCTATGTTTGCCC
CAGTAATATTCCTCTAGTGCAATATTACCGGCAAGAAAAAGCAGAAATACGCGCCCTCGATCAGGAGAGCGCTCGTGCAG
CCGAAGCTAAAGCACGATTTGAAGCGAAGCAAGCCCGTCTGGCGCGGGAGAAGTTGGCCAGAGAATTACGGCATAAGCAA
GCCGCTGTCAAATTGACCGATGCTGATCAACAAACAGTTGACGCTGCTGTCAGTCGTTTGACCCGCCAATCTGATGGCTC
AGAGTCTGTTATCAATATCCCCGCAGGACAACTGCCGGATAACAGTGCAGTTATTGCCGCCCGTGAAGCCCGAAAAGCAC
AGGCCAGAGCACGGCAGGCAGAGAAACAGCAGGCACGATCAACGGAAGAAACAACCGACGTTGTTGATCCTCGTCAAGCC
GCAGTAGCCGCCGCTATCGCCAGAGTCAAAGCTAAGAAAGCCGCTCAGGTACAACACGTTACCACTGACGTGGCGGAGGC
GGGATCAGAGGCCATAGCAGAAGACCCACGGAAAGCCGCAGTAGCCGCCGCTATTGCCAGAGTCAAAGCTAAGAAAGCCG
TTCAGGCACAACACGTTACCACTGACGTGGCGGAGGCGGGATCAGAGGCCATGGCAGAAGACCCACGGAAAGCCGCTGTG
GCCGCCGCTATTGCCAGAGTCAAAGCAAAGAAAGCCGCTCAGGCACAACACGTTACCACTGACGTGGCGGAAGCGGGATC
AGAGGCCATGGCAGAAGACCCACGGAAAGCCGCTGTGGCCGCCGCTATCGCCAGAGTCAAAGCAAAGAAAGCCGCTCAAG
CGATAAATCCTGACTAA

Upstream 100 bases:

>100_bases
AACTGGAAATGGGATTTGAATACCATTCCGGTCAAGAATCTGCCTAATCAGTTGGTCGCCTCACAAATGATTCCGGTAAA
AATGATAGACGTGGAGCAAC

Downstream 100 bases:

>100_bases
AACATCTCAGTTTGGGAAAACGCTCGGCCACAATTACCTATCATTCTGGCTGGATAATCATTCTGGCTAAATAACCATAA
TGGCTAAATGATGCTAATCG

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 698; Mature: 698

Protein sequence:

>698_residues
MFKLFTARQHDKIWDFDGGIHPPEMKLQSSTVPMRIAPLPDQLIIPLQQHLGPEGELRVRAGEQVLKGQPLTVGRGRTVP
VHAPTSGMITAIAPHTTAHPSGLAELCVHITPDGEDRWREQQPWADYRQRDKMALLDRIHQAGIAGLGGAGFPTASKLQG
GLNGIITLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQRALRGQDGIHLRVVP
TKYPSGGAKQLTKILTGKEVPFGKHSSSIGVLMQNVGTVVAIKRAVIDDEPLIERVVTLTGDALSSPGNFWARIGTPVLY
LLKLAGFKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMGLSEPEQSCIRCGLCVDACPAGLLPQQLYWFS
RGEEHEKARNHNLFDCIECGACAYVCPSNIPLVQYYRQEKAEIRALDQESARAAEAKARFEAKQARLAREKLARELRHKQ
AAVKLTDADQQTVDAAVSRLTRQSDGSESVINIPAGQLPDNSAVIAAREARKAQARARQAEKQQARSTEETTDVVDPRQA
AVAAAIARVKAKKAAQVQHVTTDVAEAGSEAIAEDPRKAAVAAAIARVKAKKAVQAQHVTTDVAEAGSEAMAEDPRKAAV
AAAIARVKAKKAAQAQHVTTDVAEAGSEAMAEDPRKAAVAAAIARVKAKKAAQAINPD

Sequences:

>Translated_698_residues
MFKLFTARQHDKIWDFDGGIHPPEMKLQSSTVPMRIAPLPDQLIIPLQQHLGPEGELRVRAGEQVLKGQPLTVGRGRTVP
VHAPTSGMITAIAPHTTAHPSGLAELCVHITPDGEDRWREQQPWADYRQRDKMALLDRIHQAGIAGLGGAGFPTASKLQG
GLNGIITLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQRALRGQDGIHLRVVP
TKYPSGGAKQLTKILTGKEVPFGKHSSSIGVLMQNVGTVVAIKRAVIDDEPLIERVVTLTGDALSSPGNFWARIGTPVLY
LLKLAGFKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMGLSEPEQSCIRCGLCVDACPAGLLPQQLYWFS
RGEEHEKARNHNLFDCIECGACAYVCPSNIPLVQYYRQEKAEIRALDQESARAAEAKARFEAKQARLAREKLARELRHKQ
AAVKLTDADQQTVDAAVSRLTRQSDGSESVINIPAGQLPDNSAVIAAREARKAQARARQAEKQQARSTEETTDVVDPRQA
AVAAAIARVKAKKAAQVQHVTTDVAEAGSEAIAEDPRKAAVAAAIARVKAKKAVQAQHVTTDVAEAGSEAMAEDPRKAAV
AAAIARVKAKKAAQAQHVTTDVAEAGSEAMAEDPRKAAVAAAIARVKAKKAAQAINPD
>Mature_698_residues
MFKLFTARQHDKIWDFDGGIHPPEMKLQSSTVPMRIAPLPDQLIIPLQQHLGPEGELRVRAGEQVLKGQPLTVGRGRTVP
VHAPTSGMITAIAPHTTAHPSGLAELCVHITPDGEDRWREQQPWADYRQRDKMALLDRIHQAGIAGLGGAGFPTASKLQG
GLNGIITLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQRALRGQDGIHLRVVP
TKYPSGGAKQLTKILTGKEVPFGKHSSSIGVLMQNVGTVVAIKRAVIDDEPLIERVVTLTGDALSSPGNFWARIGTPVLY
LLKLAGFKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMGLSEPEQSCIRCGLCVDACPAGLLPQQLYWFS
RGEEHEKARNHNLFDCIECGACAYVCPSNIPLVQYYRQEKAEIRALDQESARAAEAKARFEAKQARLAREKLARELRHKQ
AAVKLTDADQQTVDAAVSRLTRQSDGSESVINIPAGQLPDNSAVIAAREARKAQARARQAEKQQARSTEETTDVVDPRQA
AVAAAIARVKAKKAAQVQHVTTDVAEAGSEAIAEDPRKAAVAAAIARVKAKKAVQAQHVTTDVAEAGSEAMAEDPRKAAV
AAAIARVKAKKAAQAQHVTTDVAEAGSEAMAEDPRKAAVAAAIARVKAKKAAQAINPD

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=562, Percent_Identity=66.0142348754448, Blast_Score=757, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 74989; Mature: 74989

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKLFTARQHDKIWDFDGGIHPPEMKLQSSTVPMRIAPLPDQLIIPLQQHLGPEGELRVR
CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEE
AGEQVLKGQPLTVGRGRTVPVHAPTSGMITAIAPHTTAHPSGLAELCVHITPDGEDRWRE
CCHHHHCCCCEEECCCCEEEEECCCCCCEEEECCCCCCCCCCHHHHEEECCCCCHHHHHC
QQPWADYRQRDKMALLDRIHQAGIAGLGGAGFPTASKLQGGLNGIITLIINAAECEPYIT
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHEEEHHEEECCCCCCEEC
ADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQRALRGQDGIHLRVVP
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEE
TKYPSGGAKQLTKILTGKEVPFGKHSSSIGVLMQNVGTVVAIKRAVIDDEPLIERVVTLT
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHC
GDALSSPGNFWARIGTPVLYLLKLAGFKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCI
CHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCEECCCEE
LAPAETEMGLSEPEQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEKARNHNLFDCIECG
ECCCCCCCCCCCHHHHHHHHCCHHHHCCCCCCHHHHHHHCCCCHHHHHHCCCCHHHHHHC
ACAYVCPSNIPLVQYYRQEKAEIRALDQESARAAEAKARFEAKQARLAREKLARELRHKQ
CEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVKLTDADQQTVDAAVSRLTRQSDGSESVINIPAGQLPDNSAVIAAREARKAQARARQA
HEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEHHHHHHHHHHHHHH
EKQQARSTEETTDVVDPRQAAVAAAIARVKAKKAAQVQHVTTDVAEAGSEAIAEDPRKAA
HHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHH
VAAAIARVKAKKAVQAQHVTTDVAEAGSEAMAEDPRKAAVAAAIARVKAKKAAQAQHVTT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DVAEAGSEAMAEDPRKAAVAAAIARVKAKKAAQAINPD
HHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFKLFTARQHDKIWDFDGGIHPPEMKLQSSTVPMRIAPLPDQLIIPLQQHLGPEGELRVR
CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEE
AGEQVLKGQPLTVGRGRTVPVHAPTSGMITAIAPHTTAHPSGLAELCVHITPDGEDRWRE
CCHHHHCCCCEEECCCCEEEEECCCCCCEEEECCCCCCCCCCHHHHEEECCCCCHHHHHC
QQPWADYRQRDKMALLDRIHQAGIAGLGGAGFPTASKLQGGLNGIITLIINAAECEPYIT
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHEEEHHEEECCCCCCEEC
ADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQRALRGQDGIHLRVVP
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEE
TKYPSGGAKQLTKILTGKEVPFGKHSSSIGVLMQNVGTVVAIKRAVIDDEPLIERVVTLT
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHC
GDALSSPGNFWARIGTPVLYLLKLAGFKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCI
CHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCEECCCEE
LAPAETEMGLSEPEQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEKARNHNLFDCIECG
ECCCCCCCCCCCHHHHHHHHCCHHHHCCCCCCHHHHHHHCCCCHHHHHHCCCCHHHHHHC
ACAYVCPSNIPLVQYYRQEKAEIRALDQESARAAEAKARFEAKQARLAREKLARELRHKQ
CEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVKLTDADQQTVDAAVSRLTRQSDGSESVINIPAGQLPDNSAVIAAREARKAQARARQA
HEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEHHHHHHHHHHHHHH
EKQQARSTEETTDVVDPRQAAVAAAIARVKAKKAAQVQHVTTDVAEAGSEAIAEDPRKAA
HHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHH
VAAAIARVKAKKAVQAQHVTTDVAEAGSEAMAEDPRKAAVAAAIARVKAKKAAQAQHVTT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DVAEAGSEAMAEDPRKAAVAAAIARVKAKKAAQAINPD
HHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA