Click here to switch to the map view.

The map label for this gene is perM [H]

Identifier: 170023599

GI number: 170023599

Start: 1498593

End: 1499657

Strand: Direct

Name: perM [H]

Synonym: YPK_1357

Alternate gene names: 170023599

Gene position: 1498593-1499657 (Clockwise)

Preceding gene: 170023596

Following gene: 170023600

Centisome position: 31.96

GC content: 47.51

Gene sequence:

>1065_bases
ATGCTAGAGCTGTTGTTACAATGGTATCGCCGTCGTTTTACTGACCCGCAGGTCATTACGTTACTGGTTATCTTACTGGC
GGGTTTCTGCATTCTCTACTTCTTCAGCGGTATTTTAGCGCCTTTGCTGGCCGCTCTTGTTTTGGCTTATTTATTAGAGT
GGCCAACTGCCCGCTTGCAGCGTATTGGTTGTTCACGATCCTGGGCGGCCAGTATCGTATTTGTGCTATTTGTCAGTATC
ATGCTGTTAGCGGTATTTGTCGTGGCACCAACGGCTTGGCAGCAAGGGATTAATCTGGCGTCAGATATGCCAAAGATGAT
CAATAAATTCAATGATTTTGCCCATACATTACCGGCCCGTTACCCGGCACTGGTCGATGCCGGTATTGTCGATATGATGG
CGGAAAATCTACGCAGTAAAATGTCAGGTCTCGGCGACTCCGTGGTTAAATTTTCTCTGGCCTCTTTGATTGGCTTGCTG
ACATTGGCTATTTATCTGATTTTGGTTCCATTGATGCTGTTCTTCTTACTCAAAGATAAAGAACAGATGCTTAATGCGGT
GCGCCGTGTTTTGCCGCGTAACCGCGGTTTGGCCGGGCAGGTATGGGTGGAGATGAACCAACAGATTACTAACTATATTC
GTGGCAAAGTGCTGGAAATGGTGATTGTGGGTATTGCCACTTATCTGGTGTTTTTCATCATGGGGATGAATTACGCTCTG
CTATTGGCGGTGCTGGTGGGGTTCTCTGTGTTGATTCCTTATATTGGTGCCGTGATTGTCACCATCCCTGTGGTGTTGGT
TGCGTTGTTCCAATGGGGTATCGGGGCAGATTTCTGGACGCTTTTTGTCGCCTATTTAGTGGTGCAAGGGTTAGATGGCA
ACTTGTTGGTCCCCGTGCTGTTCTCTGAAGCTGTTAATCTGCATCCGTTGGTTATTATCCTATCAGTGATCATTTTTGGC
GGTATGTGGGGTTTCTGGGGCGTATTTTTTGCCATTCCGCTGGCAACGCTGGTCAAAGCGGTTATCCATGCCTGGCCAGA
AGAATTCATTCCTGACGCGGATTAA

Upstream 100 bases:

>100_bases
TGACGGTAACACCTCACCTTCGGGTTCAGCCCTGTTTGCCAGAGGGTAAAGGGATCCGCCAATTTGCGGATTTCTCATTG
TATTTAAGGAGCCATTTCGG

Downstream 100 bases:

>100_bases
TAAATACGTTGATAACAAAGTCCTGGCTTCTTGGTCGGGACTTTGAACTCATAGAAACAGGCTAAAAAAAATCTGCTCTG
CAACAATATCAACTCTGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MLELLLQWYRRRFTDPQVITLLVILLAGFCILYFFSGILAPLLAALVLAYLLEWPTARLQRIGCSRSWAASIVFVLFVSI
MLLAVFVVAPTAWQQGINLASDMPKMINKFNDFAHTLPARYPALVDAGIVDMMAENLRSKMSGLGDSVVKFSLASLIGLL
TLAIYLILVPLMLFFLLKDKEQMLNAVRRVLPRNRGLAGQVWVEMNQQITNYIRGKVLEMVIVGIATYLVFFIMGMNYAL
LLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLLVPVLFSEAVNLHPLVIILSVIIFG
GMWGFWGVFFAIPLATLVKAVIHAWPEEFIPDAD

Sequences:

>Translated_354_residues
MLELLLQWYRRRFTDPQVITLLVILLAGFCILYFFSGILAPLLAALVLAYLLEWPTARLQRIGCSRSWAASIVFVLFVSI
MLLAVFVVAPTAWQQGINLASDMPKMINKFNDFAHTLPARYPALVDAGIVDMMAENLRSKMSGLGDSVVKFSLASLIGLL
TLAIYLILVPLMLFFLLKDKEQMLNAVRRVLPRNRGLAGQVWVEMNQQITNYIRGKVLEMVIVGIATYLVFFIMGMNYAL
LLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLLVPVLFSEAVNLHPLVIILSVIIFG
GMWGFWGVFFAIPLATLVKAVIHAWPEEFIPDAD
>Mature_354_residues
MLELLLQWYRRRFTDPQVITLLVILLAGFCILYFFSGILAPLLAALVLAYLLEWPTARLQRIGCSRSWAASIVFVLFVSI
MLLAVFVVAPTAWQQGINLASDMPKMINKFNDFAHTLPARYPALVDAGIVDMMAENLRSKMSGLGDSVVKFSLASLIGLL
TLAIYLILVPLMLFFLLKDKEQMLNAVRRVLPRNRGLAGQVWVEMNQQITNYIRGKVLEMVIVGIATYLVFFIMGMNYAL
LLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLLVPVLFSEAVNLHPLVIILSVIIFG
GMWGFWGVFFAIPLATLVKAVIHAWPEEFIPDAD

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=347, Percent_Identity=78.0979827089337, Blast_Score=555, Evalue=1e-159,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39397; Mature: 39397

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELLLQWYRRRFTDPQVITLLVILLAGFCILYFFSGILAPLLAALVLAYLLEWPTARLQ
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RIGCSRSWAASIVFVLFVSIMLLAVFVVAPTAWQQGINLASDMPKMINKFNDFAHTLPAR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
YPALVDAGIVDMMAENLRSKMSGLGDSVVKFSLASLIGLLTLAIYLILVPLMLFFLLKDK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQMLNAVRRVLPRNRGLAGQVWVEMNQQITNYIRGKVLEMVIVGIATYLVFFIMGMNYAL
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLLVPVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH
FSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEFIPDAD
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCC
>Mature Secondary Structure
MLELLLQWYRRRFTDPQVITLLVILLAGFCILYFFSGILAPLLAALVLAYLLEWPTARLQ
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RIGCSRSWAASIVFVLFVSIMLLAVFVVAPTAWQQGINLASDMPKMINKFNDFAHTLPAR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
YPALVDAGIVDMMAENLRSKMSGLGDSVVKFSLASLIGLLTLAIYLILVPLMLFFLLKDK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQMLNAVRRVLPRNRGLAGQVWVEMNQQITNYIRGKVLEMVIVGIATYLVFFIMGMNYAL
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLLVPVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH
FSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEFIPDAD
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]