| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is 170023153
Identifier: 170023153
GI number: 170023153
Start: 1025095
End: 1026234
Strand: Direct
Name: 170023153
Synonym: YPK_0904
Alternate gene names: NA
Gene position: 1025095-1026234 (Clockwise)
Preceding gene: 170023152
Following gene: 170023154
Centisome position: 21.86
GC content: 55.18
Gene sequence:
>1140_bases ATGAGTTGGCCACAGGTAAATATTGACCAAAAAAACCAGTTACAGGGCGAAACCAAAGAGATAGAACGGGCTGTGCTGTA TATCGGTACCGGCAAGGTGAACGCCGGTAAAACATTAGCGGTAAACACACAAACGGATTTTGATGTGTTGTTAGGCACGG ATGCCAGCACGGTAAAAAGTTGTGTCAACGCTGCGATGCTGAATGCAGGCCAGAACTGGAACGGCTTTGTGCATGTAATT GCTGAGCCTGCAAAAAATGCAGAGATTGATCCACTGGCGTGGGTATCGGCAGTCAGAGCCGCACAGTTGGTGGCCAGTGT CGAGGGTGTGGTGGTCGTGCTGCCTGCCGATAAAGCCACCATTACCGCCGCCGCCAGCCTGCGGGCTGAATTGCTGGCCA AGTTTGGCCGCTGGGTGTGGTTTGTGCTGGCTGTTGATGGTCCTCAGGTCGAAGAGGGCTGGCCGGAGTATTTAGTTCGA TTGGCAGCATTACAGCAGGGCGTTGCGGCGTCATCGGTGCAACTGGTGCCACGTCTGTGGGGCAATGAGCCGGGGGTGTT GGCCGGGCGTTTATGTAGCCGTGCCGTGACCGTTGCCGACAGCCCGGCCCGTGTGGCCACTGGCCCGCTATTGGAAATGG GCAGTGATGCGCAGCCAGTGGACGGTAAAGGTGTAGCGCTGGATTTGGCCACATTACAGGCGCTGGAAACCCTGCGTTAT TCGGTACCAATGTGGTACCCGGATTATGACGGTATGTACTGGGCCGATGGCCGCACGCTGGATGTCGAGGGCGGAGATTA TCAGGTGATTGAGTACCTGCGTATTGTTGATAAAGCGGCCCGGCGTATTCGCTTGCAGGCGATCGCCAAGATTGCGGACC GGGCGCTGAACAGTACCCCCGGCAGCATTGCCGCGCATAAAACCTATTTTTCCAAGGTATTACGCGAAATGGCCCGCAGT ACACAGATTAACGGGATCACTTTCCCCGGCGAAGTAAAACCGCCGAAAGAGGGGGATGTGGTGATTACGTGGCGCACCGC CACCAAAGTGGAGATTTATATCGTGGTTCGTCCGTATGAATGCCCGAAAAGTATCACCGTCAGTTTGATGTTGGATACCG CACTGGAGGATAGCCAATGA
Upstream 100 bases:
>100_bases TTTTGGGTATGAACGATGAAGATTTTAATAAAGCCTTGGCGCGGCAGTTGCAGGCCATAGGATTTGGCACGTGATACGTG CAACACATTAAGGGGTGACG
Downstream 100 bases:
>100_bases GTCGTATTTCTGGTCAATCGGTTGATGTGAACATGGACGGTGACCTGATCCACGTTGAAAAGATTGGGCTGACAATTTCC GATAACAGCGGCCCGGCACA
Product: putative phage gene
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MSWPQVNIDQKNQLQGETKEIERAVLYIGTGKVNAGKTLAVNTQTDFDVLLGTDASTVKSCVNAAMLNAGQNWNGFVHVI AEPAKNAEIDPLAWVSAVRAAQLVASVEGVVVVLPADKATITAAASLRAELLAKFGRWVWFVLAVDGPQVEEGWPEYLVR LAALQQGVAASSVQLVPRLWGNEPGVLAGRLCSRAVTVADSPARVATGPLLEMGSDAQPVDGKGVALDLATLQALETLRY SVPMWYPDYDGMYWADGRTLDVEGGDYQVIEYLRIVDKAARRIRLQAIAKIADRALNSTPGSIAAHKTYFSKVLREMARS TQINGITFPGEVKPPKEGDVVITWRTATKVEIYIVVRPYECPKSITVSLMLDTALEDSQ
Sequences:
>Translated_379_residues MSWPQVNIDQKNQLQGETKEIERAVLYIGTGKVNAGKTLAVNTQTDFDVLLGTDASTVKSCVNAAMLNAGQNWNGFVHVI AEPAKNAEIDPLAWVSAVRAAQLVASVEGVVVVLPADKATITAAASLRAELLAKFGRWVWFVLAVDGPQVEEGWPEYLVR LAALQQGVAASSVQLVPRLWGNEPGVLAGRLCSRAVTVADSPARVATGPLLEMGSDAQPVDGKGVALDLATLQALETLRY SVPMWYPDYDGMYWADGRTLDVEGGDYQVIEYLRIVDKAARRIRLQAIAKIADRALNSTPGSIAAHKTYFSKVLREMARS TQINGITFPGEVKPPKEGDVVITWRTATKVEIYIVVRPYECPKSITVSLMLDTALEDSQ >Mature_378_residues SWPQVNIDQKNQLQGETKEIERAVLYIGTGKVNAGKTLAVNTQTDFDVLLGTDASTVKSCVNAAMLNAGQNWNGFVHVIA EPAKNAEIDPLAWVSAVRAAQLVASVEGVVVVLPADKATITAAASLRAELLAKFGRWVWFVLAVDGPQVEEGWPEYLVRL AALQQGVAASSVQLVPRLWGNEPGVLAGRLCSRAVTVADSPARVATGPLLEMGSDAQPVDGKGVALDLATLQALETLRYS VPMWYPDYDGMYWADGRTLDVEGGDYQVIEYLRIVDKAARRIRLQAIAKIADRALNSTPGSIAAHKTYFSKVLREMARST QINGITFPGEVKPPKEGDVVITWRTATKVEIYIVVRPYECPKSITVSLMLDTALEDSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41076; Mature: 40945
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWPQVNIDQKNQLQGETKEIERAVLYIGTGKVNAGKTLAVNTQTDFDVLLGTDASTVKS CCCCCCCCCCCHHCCCHHHHHCEEEEEEECCCCCCCCEEEEECCCCCEEEECCCHHHHHH CVNAAMLNAGQNWNGFVHVIAEPAKNAEIDPLAWVSAVRAAQLVASVEGVVVVLPADKAT HHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCE ITAAASLRAELLAKFGRWVWFVLAVDGPQVEEGWPEYLVRLAALQQGVAASSVQLVPRLW EHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC GNEPGVLAGRLCSRAVTVADSPARVATGPLLEMGSDAQPVDGKGVALDLATLQALETLRY CCCCCHHHHHHHHHEEEECCCCCCCCCCCHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHH SVPMWYPDYDGMYWADGRTLDVEGGDYQVIEYLRIVDKAARRIRLQAIAKIADRALNSTP CCCEECCCCCCEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GSIAAHKTYFSKVLREMARSTQINGITFPGEVKPPKEGDVVITWRTATKVEIYIVVRPYE CCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCEEEEEECCCEEEEEEEEECCC CPKSITVSLMLDTALEDSQ CCCCEEEEEEEECCCCCCC >Mature Secondary Structure SWPQVNIDQKNQLQGETKEIERAVLYIGTGKVNAGKTLAVNTQTDFDVLLGTDASTVKS CCCCCCCCCCHHCCCHHHHHCEEEEEEECCCCCCCCEEEEECCCCCEEEECCCHHHHHH CVNAAMLNAGQNWNGFVHVIAEPAKNAEIDPLAWVSAVRAAQLVASVEGVVVVLPADKAT HHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCE ITAAASLRAELLAKFGRWVWFVLAVDGPQVEEGWPEYLVRLAALQQGVAASSVQLVPRLW EHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC GNEPGVLAGRLCSRAVTVADSPARVATGPLLEMGSDAQPVDGKGVALDLATLQALETLRY CCCCCHHHHHHHHHEEEECCCCCCCCCCCHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHH SVPMWYPDYDGMYWADGRTLDVEGGDYQVIEYLRIVDKAARRIRLQAIAKIADRALNSTP CCCEECCCCCCEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GSIAAHKTYFSKVLREMARSTQINGITFPGEVKPPKEGDVVITWRTATKVEIYIVVRPYE CCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCEEEEEECCCEEEEEEEEECCC CPKSITVSLMLDTALEDSQ CCCCEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA