| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
Click here to switch to the map view.
The map label for this gene is creD [H]
Identifier: 170023129
GI number: 170023129
Start: 1006676
End: 1008133
Strand: Direct
Name: creD [H]
Synonym: YPK_0880
Alternate gene names: 170023129
Gene position: 1006676-1008133 (Clockwise)
Preceding gene: 170023128
Following gene: 170023133
Centisome position: 21.47
GC content: 45.82
Gene sequence:
>1458_bases ATGTTCAAATCTGTGCTGTTTTGGAAAATAGTTACGCTGCTGGGATTAATGCTATTGATGATGATCCCTAAAGGGATGCT GCTACATGTAATCGATGAACGCAGTGGCTACCGACAAAGTGTGATCGATAAAGTCAGTGACAGTACCAGCCGTTCACAAA AAATCCTCGGTCCATTGATTGTCGTGCCGTATAGCGAGTGGGTTGAAACTGAAGTCGATGGCAAAAAACAAGGGAAATGG ACCCATTTTTATCACTACATACTGCCAAACGTGATGACTGTAAAAGGGACCCCAGATGTTGAAGTTCGCCAGTTAGGTAT TTATAAAACACAGGTATATCAGGGTGAATTCGATTTCCATGGGGAATTTGAGGTATCTTCGCTGGATGATTTAGATCGTG AAGGCGTCATCATTGGTAAGCCTTCACTGGTGCTGGCACTGAGTGATGCGCGGGGTATCCAGCGCATTTCGCCACTCAGC GTAGGGAAGACTAAAATTAACTTCGAACCCGGCGCTTTCTCCGGTCACTCGGTACAAGGTGTTCATGCACCATTGACAAT AGAGCAGGTTCTACAGGGTAAATTTGATGTCGATTTCACCATGTCGCTTGCGGGTACGACTAGCTTATCGGTAGTCCCGG TTGGGCGTAACAGTGAATTAACGTTACAAAGTAACTGGCCACATCCTAATTTTGTCGGTAATTTTTTACCTTTGCAGCGC AAGGTTGATGAGAAAGGCTTCCGTGCTCACTGGAGCAGTAATTGGTTGGCCAACAGCATGAACACGAATTTCACCGGTGG CGATGCAGCCTTTCATTTTGGTAGCTTACCGGCCTTCACCACCAGCCTGATTGAACCGGTTGATCACTACCAATTAACCG AAAGAGCCATTAAATACGCTATTTTATTTATCGGTCTGACATTCTTCAGCTTCTTCCTATTCGAGAGTCTGACGTCATTG CGCCTGCACCCAATGCAATATCTGTTAGTCGGGGCGGCATTGGTTCTGTTCTATCTGATGTTGTTAGCGTTCTCTGAACA CATTGGTTTCACACTGGCTTACCTTCTGGCCAGTCTGAGCTGTAGCTTATTGATTGCTATCTATTTGAGTGCCGTATTGG GCGGATGGTTGCGCGGCACATTGTTTGCCTGCGGCTTATTATTGTTGTACGGCATTTTGTACGGATTGTTACAATCAGAG GACAACGCACTGCTGTTAGGGGCTGGGTTACTGTTTGTTGTCTTGACGGTGGTAATGTTATTGACGCGGCGTTTAGACTG GTACCAAGTTGCTGATACACAACGGTTGACCGAGTGGAGAGCTCCAGAGCCAAGCGCTGAAGAGAGCCCGAGCAAAACGG CACCAGAGGGCGAGAGTATGAAAGATGATAATAAAAAAAAAGATGATCACGTAAAAAAAGACGCTAATGAGAAAGATGAG TTCCGTTTATGGAAGTAA
Upstream 100 bases:
>100_bases AAGGGTTCACCGCTAACTTCACGTTCACTTCACATAGCCTCATTCTCCTTTCACTTCACGGTCTTAAGCTGCTCTCCTGA TGTTAAAAGGAGTGCAAGTC
Downstream 100 bases:
>100_bases CCGGGCGCAGCTAGACTAAACTTAACGGGCATATCGGGTGCCCGTTAAATTGAGCTCTGATGTAACAGGTTCTGACCCGG AGGATCAAAGTAACGCCTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 485; Mature: 485
Protein sequence:
>485_residues MFKSVLFWKIVTLLGLMLLMMIPKGMLLHVIDERSGYRQSVIDKVSDSTSRSQKILGPLIVVPYSEWVETEVDGKKQGKW THFYHYILPNVMTVKGTPDVEVRQLGIYKTQVYQGEFDFHGEFEVSSLDDLDREGVIIGKPSLVLALSDARGIQRISPLS VGKTKINFEPGAFSGHSVQGVHAPLTIEQVLQGKFDVDFTMSLAGTTSLSVVPVGRNSELTLQSNWPHPNFVGNFLPLQR KVDEKGFRAHWSSNWLANSMNTNFTGGDAAFHFGSLPAFTTSLIEPVDHYQLTERAIKYAILFIGLTFFSFFLFESLTSL RLHPMQYLLVGAALVLFYLMLLAFSEHIGFTLAYLLASLSCSLLIAIYLSAVLGGWLRGTLFACGLLLLYGILYGLLQSE DNALLLGAGLLFVVLTVVMLLTRRLDWYQVADTQRLTEWRAPEPSAEESPSKTAPEGESMKDDNKKKDDHVKKDANEKDE FRLWK
Sequences:
>Translated_485_residues MFKSVLFWKIVTLLGLMLLMMIPKGMLLHVIDERSGYRQSVIDKVSDSTSRSQKILGPLIVVPYSEWVETEVDGKKQGKW THFYHYILPNVMTVKGTPDVEVRQLGIYKTQVYQGEFDFHGEFEVSSLDDLDREGVIIGKPSLVLALSDARGIQRISPLS VGKTKINFEPGAFSGHSVQGVHAPLTIEQVLQGKFDVDFTMSLAGTTSLSVVPVGRNSELTLQSNWPHPNFVGNFLPLQR KVDEKGFRAHWSSNWLANSMNTNFTGGDAAFHFGSLPAFTTSLIEPVDHYQLTERAIKYAILFIGLTFFSFFLFESLTSL RLHPMQYLLVGAALVLFYLMLLAFSEHIGFTLAYLLASLSCSLLIAIYLSAVLGGWLRGTLFACGLLLLYGILYGLLQSE DNALLLGAGLLFVVLTVVMLLTRRLDWYQVADTQRLTEWRAPEPSAEESPSKTAPEGESMKDDNKKKDDHVKKDANEKDE FRLWK >Mature_485_residues MFKSVLFWKIVTLLGLMLLMMIPKGMLLHVIDERSGYRQSVIDKVSDSTSRSQKILGPLIVVPYSEWVETEVDGKKQGKW THFYHYILPNVMTVKGTPDVEVRQLGIYKTQVYQGEFDFHGEFEVSSLDDLDREGVIIGKPSLVLALSDARGIQRISPLS VGKTKINFEPGAFSGHSVQGVHAPLTIEQVLQGKFDVDFTMSLAGTTSLSVVPVGRNSELTLQSNWPHPNFVGNFLPLQR KVDEKGFRAHWSSNWLANSMNTNFTGGDAAFHFGSLPAFTTSLIEPVDHYQLTERAIKYAILFIGLTFFSFFLFESLTSL RLHPMQYLLVGAALVLFYLMLLAFSEHIGFTLAYLLASLSCSLLIAIYLSAVLGGWLRGTLFACGLLLLYGILYGLLQSE DNALLLGAGLLFVVLTVVMLLTRRLDWYQVADTQRLTEWRAPEPSAEESPSKTAPEGESMKDDNKKKDDHVKKDANEKDE FRLWK
Specific function: Unknown
COG id: COG4452
COG function: function code V; Inner membrane protein involved in colicin E2 resistance
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790862, Length=428, Percent_Identity=46.9626168224299, Blast_Score=384, Evalue=1e-108,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010364 [H]
Pfam domain/function: PF06123 CreD [H]
EC number: NA
Molecular weight: Translated: 54375; Mature: 54375
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKSVLFWKIVTLLGLMLLMMIPKGMLLHVIDERSGYRQSVIDKVSDSTSRSQKILGPLI CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCEE VVPYSEWVETEVDGKKQGKWTHFYHYILPNVMTVKGTPDVEVRQLGIYKTQVYQGEFDFH EECCHHHHHCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHCCEEEEEEEECCCCCC GEFEVSSLDDLDREGVIIGKPSLVLALSDARGIQRISPLSVGKTKINFEPGAFSGHSVQG CCEECCCCCCCCCCCEEEECCCEEEEECCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCC VHAPLTIEQVLQGKFDVDFTMSLAGTTSLSVVPVGRNSELTLQSNWPHPNFVGNFLPLQR CCCCCCHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHH KVDEKGFRAHWSSNWLANSMNTNFTGGDAAFHFGSLPAFTTSLIEPVDHYQLTERAIKYA HHCCCCCCEECCCCCCCCCCCCCCCCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHH ILFIGLTFFSFFLFESLTSLRLHPMQYLLVGAALVLFYLMLLAFSEHIGFTLAYLLASLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CSLLIAIYLSAVLGGWLRGTLFACGLLLLYGILYGLLQSEDNALLLGAGLLFVVLTVVML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHH LTRRLDWYQVADTQRLTEWRAPEPSAEESPSKTAPEGESMKDDNKKKDDHVKKDANEKDE HHCCCCHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC FRLWK CCCCC >Mature Secondary Structure MFKSVLFWKIVTLLGLMLLMMIPKGMLLHVIDERSGYRQSVIDKVSDSTSRSQKILGPLI CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCEE VVPYSEWVETEVDGKKQGKWTHFYHYILPNVMTVKGTPDVEVRQLGIYKTQVYQGEFDFH EECCHHHHHCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHCCEEEEEEEECCCCCC GEFEVSSLDDLDREGVIIGKPSLVLALSDARGIQRISPLSVGKTKINFEPGAFSGHSVQG CCEECCCCCCCCCCCEEEECCCEEEEECCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCC VHAPLTIEQVLQGKFDVDFTMSLAGTTSLSVVPVGRNSELTLQSNWPHPNFVGNFLPLQR CCCCCCHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHH KVDEKGFRAHWSSNWLANSMNTNFTGGDAAFHFGSLPAFTTSLIEPVDHYQLTERAIKYA HHCCCCCCEECCCCCCCCCCCCCCCCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHH ILFIGLTFFSFFLFESLTSLRLHPMQYLLVGAALVLFYLMLLAFSEHIGFTLAYLLASLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CSLLIAIYLSAVLGGWLRGTLFACGLLLLYGILYGLLQSEDNALLLGAGLLFVVLTVVML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHH LTRRLDWYQVADTQRLTEWRAPEPSAEESPSKTAPEGESMKDDNKKKDDHVKKDANEKDE HHCCCCHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC FRLWK CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2835585; 3531171; 7610040; 9278503; 2984198 [H]