Click here to switch to the map view.

The map label for this gene is rhsB [H]

Identifier: 170023017

GI number: 170023017

Start: 873297

End: 873842

Strand: Direct

Name: rhsB [H]

Synonym: YPK_0768

Alternate gene names: 170023017

Gene position: 873297-873842 (Clockwise)

Preceding gene: 170023016

Following gene: 170023018

Centisome position: 18.62

GC content: 40.84

Gene sequence:

>546_bases
ATGCAGGGCCAATATTACGACACGGAAAGCGGTTTACATTATAACCGCTACCGTTATTATGATCCGGCCTGCGGTGTGTT
TATCAGCCAGGACCCAATAGGGTTAAAAGGCGGATTAAATCCGTACCAGTTTGCGGTGAATACACTGGGATGGGTGGATC
CGCTGGGGTTGACGAATTGGTCCCAGAAACTAAGAGATGCAAATGTAGCACAACCGGGTGGTTTGACTAATGCTCATGGG
CATCACATAGTATTTAAAGGTAATTTTGAAGGCGATTCTAGGCAGCCTTTTGTGAATGCGAGTAAATCTATATTATCTAA
GTATGATATAGATCCTGTTAATGATATGTCTAATCTTATGTGGGCTTCTAATATTGAAGGAGTTCATACAACTGATAATG
CTAAAAAGGTAGCTTTAGGATTAGCAAAAGCGGATCGAGATTTAGACGCTCAAATGGAATCTGGGGAGATAGATAAAAAA
TGTGCAAAAGGAAAAATGGAATCTCGACTCCAGTCAATTGGTCAGTCAGTTTTTGGAGGATATTAA

Upstream 100 bases:

>100_bases
ACGTACTCAGGAGATTTAAATGACTTATTCTTATATAAACAAAATATTTGAGTTGTAAAAATGTAATTTATTTTTGCCAA
ATAATAGCCAGCCGCTGCGC

Downstream 100 bases:

>100_bases
TATGAGTTTTTTTGATACGTCCTTTGAAGGTAAGCTTATTGAAGCTGTTAAAATGGATTTTTTTGATCTTTTAAATAAAG
TTGAAAATGAAAATATATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MQGQYYDTESGLHYNRYRYYDPACGVFISQDPIGLKGGLNPYQFAVNTLGWVDPLGLTNWSQKLRDANVAQPGGLTNAHG
HHIVFKGNFEGDSRQPFVNASKSILSKYDIDPVNDMSNLMWASNIEGVHTTDNAKKVALGLAKADRDLDAQMESGEIDKK
CAKGKMESRLQSIGQSVFGGY

Sequences:

>Translated_181_residues
MQGQYYDTESGLHYNRYRYYDPACGVFISQDPIGLKGGLNPYQFAVNTLGWVDPLGLTNWSQKLRDANVAQPGGLTNAHG
HHIVFKGNFEGDSRQPFVNASKSILSKYDIDPVNDMSNLMWASNIEGVHTTDNAKKVALGLAKADRDLDAQMESGEIDKK
CAKGKMESRLQSIGQSVFGGY
>Mature_181_residues
MQGQYYDTESGLHYNRYRYYDPACGVFISQDPIGLKGGLNPYQFAVNTLGWVDPLGLTNWSQKLRDANVAQPGGLTNAHG
HHIVFKGNFEGDSRQPFVNASKSILSKYDIDPVNDMSNLMWASNIEGVHTTDNAKKVALGLAKADRDLDAQMESGEIDKK
CAKGKMESRLQSIGQSVFGGY

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI48994942, Length=78, Percent_Identity=51.2820512820513, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1786917, Length=57, Percent_Identity=63.1578947368421, Blast_Score=82, Evalue=1e-17,
Organism=Escherichia coli, GI1790020, Length=57, Percent_Identity=63.1578947368421, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1786706, Length=57, Percent_Identity=59.6491228070175, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 19952; Mature: 19952

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGQYYDTESGLHYNRYRYYDPACGVFISQDPIGLKGGLNPYQFAVNTLGWVDPLGLTNW
CCCCCCCCCCCCEECCEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCH
SQKLRDANVAQPGGLTNAHGHHIVFKGNFEGDSRQPFVNASKSILSKYDIDPVNDMSNLM
HHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHH
WASNIEGVHTTDNAKKVALGLAKADRDLDAQMESGEIDKKCAKGKMESRLQSIGQSVFGG
HHCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCC
Y
C
>Mature Secondary Structure
MQGQYYDTESGLHYNRYRYYDPACGVFISQDPIGLKGGLNPYQFAVNTLGWVDPLGLTNW
CCCCCCCCCCCCEECCEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCH
SQKLRDANVAQPGGLTNAHGHHIVFKGNFEGDSRQPFVNASKSILSKYDIDPVNDMSNLM
HHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHH
WASNIEGVHTTDNAKKVALGLAKADRDLDAQMESGEIDKKCAKGKMESRLQSIGQSVFGG
HHCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8387990; 8041620; 9278503; 2644231; 2403547; 7934896 [H]