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The map label for this gene is exbD [H]

Identifier: 170022924

GI number: 170022924

Start: 737503

End: 737934

Strand: Direct

Name: exbD [H]

Synonym: YPK_0673

Alternate gene names: 170022924

Gene position: 737503-737934 (Clockwise)

Preceding gene: 170022923

Following gene: 170022943

Centisome position: 15.73

GC content: 48.15

Gene sequence:

>432_bases
ATGGCAATGCGAATGAATGATTCCCTCGACGAGAGTGGAGAATTACACGAAATTAACGTGACGCCGTTTATTGATGTCAT
GTTGGTGCTGCTGATTATCTTTATGGTCGCCGCGCCGTTGGCAACGGTAGATATCAAAGTGGATCTACCTGCATCTTCGG
CAGTACCGCAGCCGCGGCCAGAGAAACCGGTATTCTTGACGGTTAAAGCGGATAACCAGCTTTATGTCGGTGACCAGCCA
GTTGACCGTGAAACATTAGCCACGGCACTGGACAAAGTGACCCAATCCAATAAAGAAACCACGATTTTCTTCCAGGCAGA
TAAAGTGGTGGATTATGAAACCTTGATGAGCGTGATGGATGCGCTACGTAAATCAGGCTATCTCAAAGTTGGGTTAGTGG
GTATGGAAGCAGGGTCCAGCGGCGTACAATAA

Upstream 100 bases:

>100_bases
GGCACAAGTGTTACTGCTGTTGAGCCGTGATTTGGATTTGGCCAGTAGCGCCGAAGTAAAGTCCCCTCGCCATCCTCATC
AATTACGAGCAGGGTGATTT

Downstream 100 bases:

>100_bases
CTTTTTGCAAGCGCGGTGACTGTTACCGCGCTTGCATCAACTTTGGTTTTTGGGGCAATTTCAGTTTTTAGGCCAATATC
GATTTCTAAGTCAATTTCAG

Product: biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MAMRMNDSLDESGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASSAVPQPRPEKPVFLTVKADNQLYVGDQP
VDRETLATALDKVTQSNKETTIFFQADKVVDYETLMSVMDALRKSGYLKVGLVGMEAGSSGVQ

Sequences:

>Translated_143_residues
MAMRMNDSLDESGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASSAVPQPRPEKPVFLTVKADNQLYVGDQP
VDRETLATALDKVTQSNKETTIFFQADKVVDYETLMSVMDALRKSGYLKVGLVGMEAGSSGVQ
>Mature_142_residues
AMRMNDSLDESGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASSAVPQPRPEKPVFLTVKADNQLYVGDQPV
DRETLATALDKVTQSNKETTIFFQADKVVDYETLMSVMDALRKSGYLKVGLVGMEAGSSGVQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=140, Percent_Identity=67.8571428571429, Blast_Score=209, Evalue=4e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15603; Mature: 15472

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMRMNDSLDESGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASSAVPQPRP
CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPVFLTVKADNQLYVGDQPVDRETLATALDKVTQSNKETTIFFQADKVVDYETLMSVMD
CCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCEECHHHHHHHHH
ALRKSGYLKVGLVGMEAGSSGVQ
HHHHCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure 
AMRMNDSLDESGELHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASSAVPQPRP
CCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPVFLTVKADNQLYVGDQPVDRETLATALDKVTQSNKETTIFFQADKVVDYETLMSVMD
CCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCEECHHHHHHHHH
ALRKSGYLKVGLVGMEAGSSGVQ
HHHHCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]