| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is stfR [C]
Identifier: 170022444
GI number: 170022444
Start: 234521
End: 235747
Strand: Reverse
Name: stfR [C]
Synonym: YPK_0183
Alternate gene names: 170022444
Gene position: 235747-234521 (Counterclockwise)
Preceding gene: 170022445
Following gene: 170022443
Centisome position: 5.03
GC content: 44.82
Gene sequence:
>1227_bases ATGAAAAATATCATGCCGCCAATTAATACCCCTGACAATGCATTTCATGACGGTAACCCGGCAACGGGTGAGCAAGGCAC GATTGTTCCAGGCGCGTGGTTGAATAACGTGCAAAGCGGTGTTATTAGCATTCAACAAGAATTATTGTCTGTATTAACGA AAGCCGGAATAGAAATAGATGAAACAAAGCAAGACCAATTAGTTACTGCTATAACAAAATTAATAACCCAGGGCATCCCT GAACTACCCTCTGCATCATTAGCCCAAAAAGGTATCGTGCAATTAAGTAGCGCGACAAACAGTGACAGTGAAACGCTAGC TGCAACATCAAAAGCTGTTAAAACGGCAAATGACGCCGCCCTGAAAATCGTGAATAACTTATCTGAAATAGCCGCAGCGG GACCGGGCGCTGTACTTGCTGCAATCACAAATCTGAATTTATTGACGACAGTAAATAGAGCTAACGGATCATTGCAATCT GCAAGCAATTTATCAGAGATAAATTTATCAGGACCTGCCGCTATGGCCGCGGCTGTTGCCAATCTTGGATTAACTGAAGC CGCTGCTGCTGTTGCTAATGCATTGAAGAAAAGTGCAAATCTGTCTGATGTAGCCAACCCTGCCGCAGCTTTGAAAAACA TCGGTGGATTTGCTGTTAGAGGGCCTCTTGATTCAAAAAATCTAAATTTAATCGGGAATACTGATGAAATTGGAGTGTGG TATCAGATAACCGACGCTGTGACTGAAAATAATAATTATCCAGTGAGAGCCAGCGGAACCCTGCTTGTCATGCCAAGCGC TTATGGTTGTCAGCAAGAATACACCTCGTATTCCGGATTGAAGTTTGTTCGGGGGCTGAGTGCTGTATGGAGTGGCTCCG GCCCGTGGCAAGCGTGGCAGCAAATATCAGCTCAACAGCCGAAAGCAGTGACAACAAGTGACTATATCCGTATTCCTGAC GTGCCAGGCGGATTGATTATTCAGTGGTTCGCTGGAAATACATCGATGGGTGAAGCATCGATGGGACCATTATCATTTCC AATCGCATTCCCCTCCGCTTGTATATTTTCAAGCGTATCAACACTCGGGAATGGCACTGGTGCATGTGACCAGATGTTTC AAGTCACATCAACAAACAGAAATTCTATCACTCTGTTTTCTCAAGTCTTTGGTTCCGGTTCGGTCCCCGGTACTGCGATC CCTCTCATTTTAGTTATAGGGTATTAA
Upstream 100 bases:
>100_bases AGCGCTTATCATCATTTTCAGACACTGTGATTGAAAATGTATTTAACAATCTCAAGCCAGCCCATACTTTTTGCTATTTT ACTTACCAGGAGAGCTGATA
Downstream 100 bases:
>100_bases GAGGTTTATATGATGATTTATTTTAGCGCAACAATAGGTGGATTTATCCCGGGTGAATGGAGAGTTGACGGAACATACAC TGATGAAACTTGGCCCACTG
Product: tail fiber repeat 2-containing protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 408; Mature: 408
Protein sequence:
>408_residues MKNIMPPINTPDNAFHDGNPATGEQGTIVPGAWLNNVQSGVISIQQELLSVLTKAGIEIDETKQDQLVTAITKLITQGIP ELPSASLAQKGIVQLSSATNSDSETLAATSKAVKTANDAALKIVNNLSEIAAAGPGAVLAAITNLNLLTTVNRANGSLQS ASNLSEINLSGPAAMAAAVANLGLTEAAAAVANALKKSANLSDVANPAAALKNIGGFAVRGPLDSKNLNLIGNTDEIGVW YQITDAVTENNNYPVRASGTLLVMPSAYGCQQEYTSYSGLKFVRGLSAVWSGSGPWQAWQQISAQQPKAVTTSDYIRIPD VPGGLIIQWFAGNTSMGEASMGPLSFPIAFPSACIFSSVSTLGNGTGACDQMFQVTSTNRNSITLFSQVFGSGSVPGTAI PLILVIGY
Sequences:
>Translated_408_residues MKNIMPPINTPDNAFHDGNPATGEQGTIVPGAWLNNVQSGVISIQQELLSVLTKAGIEIDETKQDQLVTAITKLITQGIP ELPSASLAQKGIVQLSSATNSDSETLAATSKAVKTANDAALKIVNNLSEIAAAGPGAVLAAITNLNLLTTVNRANGSLQS ASNLSEINLSGPAAMAAAVANLGLTEAAAAVANALKKSANLSDVANPAAALKNIGGFAVRGPLDSKNLNLIGNTDEIGVW YQITDAVTENNNYPVRASGTLLVMPSAYGCQQEYTSYSGLKFVRGLSAVWSGSGPWQAWQQISAQQPKAVTTSDYIRIPD VPGGLIIQWFAGNTSMGEASMGPLSFPIAFPSACIFSSVSTLGNGTGACDQMFQVTSTNRNSITLFSQVFGSGSVPGTAI PLILVIGY >Mature_408_residues MKNIMPPINTPDNAFHDGNPATGEQGTIVPGAWLNNVQSGVISIQQELLSVLTKAGIEIDETKQDQLVTAITKLITQGIP ELPSASLAQKGIVQLSSATNSDSETLAATSKAVKTANDAALKIVNNLSEIAAAGPGAVLAAITNLNLLTTVNRANGSLQS ASNLSEINLSGPAAMAAAVANLGLTEAAAAVANALKKSANLSDVANPAAALKNIGGFAVRGPLDSKNLNLIGNTDEIGVW YQITDAVTENNNYPVRASGTLLVMPSAYGCQQEYTSYSGLKFVRGLSAVWSGSGPWQAWQQISAQQPKAVTTSDYIRIPD VPGGLIIQWFAGNTSMGEASMGPLSFPIAFPSACIFSSVSTLGNGTGACDQMFQVTSTNRNSITLFSQVFGSGSVPGTAI PLILVIGY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42109; Mature: 42109
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNIMPPINTPDNAFHDGNPATGEQGTIVPGAWLNNVQSGVISIQQELLSVLTKAGIEID CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC ETKQDQLVTAITKLITQGIPELPSASLAQKGIVQLSSATNSDSETLAATSKAVKTANDAA CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCHHH LKIVNNLSEIAAAGPGAVLAAITNLNLLTTVNRANGSLQSASNLSEINLSGPAAMAAAVA HHHHHHHHHHHHCCCCHHHHHHHCCEEEEEEECCCCCHHHCCCCCEECCCCHHHHHHHHH NLGLTEAAAAVANALKKSANLSDVANPAAALKNIGGFAVRGPLDSKNLNLIGNTDEIGVW HCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCEEEECCCCCCCEEEECCCCCCEEE YQITDAVTENNNYPVRASGTLLVMPSAYGCQQEYTSYSGLKFVRGLSAVWSGSGPWQAWQ EEEEEHEECCCCCCEEECCEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCHHHHH QISAQQPKAVTTSDYIRIPDVPGGLIIQWFAGNTSMGEASMGPLSFPIAFPSACIFSSVS HHHCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCCCCCCCCCEECCHHHHHHHHHHHHH TLGNGTGACDQMFQVTSTNRNSITLFSQVFGSGSVPGTAIPLILVIGY HHCCCCCHHHHHHHHHCCCCCCEEEHHHHHCCCCCCCCCEEEEEEECC >Mature Secondary Structure MKNIMPPINTPDNAFHDGNPATGEQGTIVPGAWLNNVQSGVISIQQELLSVLTKAGIEID CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC ETKQDQLVTAITKLITQGIPELPSASLAQKGIVQLSSATNSDSETLAATSKAVKTANDAA CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCHHH LKIVNNLSEIAAAGPGAVLAAITNLNLLTTVNRANGSLQSASNLSEINLSGPAAMAAAVA HHHHHHHHHHHHCCCCHHHHHHHCCEEEEEEECCCCCHHHCCCCCEECCCCHHHHHHHHH NLGLTEAAAAVANALKKSANLSDVANPAAALKNIGGFAVRGPLDSKNLNLIGNTDEIGVW HCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCEEEECCCCCCCEEEECCCCCCEEE YQITDAVTENNNYPVRASGTLLVMPSAYGCQQEYTSYSGLKFVRGLSAVWSGSGPWQAWQ EEEEEHEECCCCCCEEECCEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCHHHHH QISAQQPKAVTTSDYIRIPDVPGGLIIQWFAGNTSMGEASMGPLSFPIAFPSACIFSSVS HHHCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCCCCCCCCCEECCHHHHHHHHHHHHH TLGNGTGACDQMFQVTSTNRNSITLFSQVFGSGSVPGTAIPLILVIGY HHCCCCCHHHHHHHHHCCCCCCEEEHHHHHCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA