Click here to switch to the map view.

The map label for this gene is ybgP [H]

Identifier: 170022315

GI number: 170022315

Start: 58879

End: 59646

Strand: Direct

Name: ybgP [H]

Synonym: YPK_0053

Alternate gene names: 170022315

Gene position: 58879-59646 (Clockwise)

Preceding gene: 170022314

Following gene: 170022316

Centisome position: 1.26

GC content: 42.45

Gene sequence:

>768_bases
ATGAAAGACATAAATAGCATGATATGGAGACAACAACGTTTGTGGGCAAAGACAGCGCTATTCGGGATAGCCTTGTGGCT
CACTGCGCTAACCAGTCAGGCGGCAATTAACCTGGATCGGACACGCATTATCTTTAATAGTACTGATAAATCAGCCAGTG
TTATTTTACAAAACCAGAGCCCGTCATCACCTTATTTGGCGCAATCTTGGTTGGAAAATACCAAAGGCCAAAAAATAGAG
AGTCCATTGGTGGCTTTACCCCCTATGCAGCGGATTGATGCCGGGCAAAAAAGCCAGGTTCGGATCATGAAACTACCGGA
TGCCGATAAATTACCCACTGATCGCGAGACATTATTCTATTTCAATGTGCGGGAAATCCCACCGCAAAGCGAAATGAATA
ATGTCGTACAAATTGCGATTCAAAATCGGATAAAGCTGTTTTATCGGCCCATGGCTATCAAAGCGAATTATAGCGATATC
TGGCAAGAGAAATTACAGATCAGTAAACAAGTGGGGGGGCTTAAAATTAATAACCCTACACCTTATTACATTACGTTGGC
TTATTTGAGTCAGAATGAAAAAGGTAACTTTCCTGGTTTTGACAGCGTCATGATTGCGCCTTTTGGTACTGAGTTTGTTA
AAACGCCGGGTTATAGCGGTAGCCGTTATAACGTTGGTTATATGGATGATTTTGGGGGCATTGTGATACGCACTTTTAAC
TGTTTATCAGCAGAATGCCAAATTCAGCCAGCTGAAAAGAGAAGGTGA

Upstream 100 bases:

>100_bases
GCCAGTAAGTGTTTTTGGGGAAAAATATTCATTAAAACGGTTGTTGATCGAAACTGAGTTATTCACAGCCAAATGCGGCC
TTTTACAGTGGAATAGCGAA

Downstream 100 bases:

>100_bases
TACACGTACCCGGTTCAGCATATGAATAAGGAATAACAATGATGCAGACTATTTTAAATAAAATAGGTCGAATCGGTGGC
TGTATTGCCCTGTCATTCGT

Product: pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKDINSMIWRQQRLWAKTALFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSPSSPYLAQSWLENTKGQKIE
SPLVALPPMQRIDAGQKSQVRIMKLPDADKLPTDRETLFYFNVREIPPQSEMNNVVQIAIQNRIKLFYRPMAIKANYSDI
WQEKLQISKQVGGLKINNPTPYYITLAYLSQNEKGNFPGFDSVMIAPFGTEFVKTPGYSGSRYNVGYMDDFGGIVIRTFN
CLSAECQIQPAEKRR

Sequences:

>Translated_255_residues
MKDINSMIWRQQRLWAKTALFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSPSSPYLAQSWLENTKGQKIE
SPLVALPPMQRIDAGQKSQVRIMKLPDADKLPTDRETLFYFNVREIPPQSEMNNVVQIAIQNRIKLFYRPMAIKANYSDI
WQEKLQISKQVGGLKINNPTPYYITLAYLSQNEKGNFPGFDSVMIAPFGTEFVKTPGYSGSRYNVGYMDDFGGIVIRTFN
CLSAECQIQPAEKRR
>Mature_255_residues
MKDINSMIWRQQRLWAKTALFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSPSSPYLAQSWLENTKGQKIE
SPLVALPPMQRIDAGQKSQVRIMKLPDADKLPTDRETLFYFNVREIPPQSEMNNVVQIAIQNRIKLFYRPMAIKANYSDI
WQEKLQISKQVGGLKINNPTPYYITLAYLSQNEKGNFPGFDSVMIAPFGTEFVKTPGYSGSRYNVGYMDDFGGIVIRTFN
CLSAECQIQPAEKRR

Specific function: Could be required for the biogenesis of the putative ybgD fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786936, Length=235, Percent_Identity=48.0851063829787, Blast_Score=238, Evalue=4e-64,
Organism=Escherichia coli, GI1788677, Length=219, Percent_Identity=46.1187214611872, Blast_Score=198, Evalue=4e-52,
Organism=Escherichia coli, GI87082203, Length=239, Percent_Identity=40.1673640167364, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1786333, Length=238, Percent_Identity=34.453781512605, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1789532, Length=204, Percent_Identity=34.3137254901961, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1790771, Length=221, Percent_Identity=31.2217194570136, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788428, Length=225, Percent_Identity=32.8888888888889, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787171, Length=204, Percent_Identity=30.3921568627451, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1786743, Length=215, Percent_Identity=27.906976744186, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081806, Length=235, Percent_Identity=28.5106382978723, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 29011; Mature: 29011

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDINSMIWRQQRLWAKTALFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCEEEEEECCC
PSSPYLAQSWLENTKGQKIESPLVALPPMQRIDAGQKSQVRIMKLPDADKLPTDRETLFY
CCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEE
FNVREIPPQSEMNNVVQIAIQNRIKLFYRPMAIKANYSDIWQEKLQISKQVGGLKINNPT
EEEECCCCHHHHHHHEEHHHHHCEEEEEECEEEECCHHHHHHHHHHHHHHHCCEEECCCC
PYYITLAYLSQNEKGNFPGFDSVMIAPFGTEFVKTPGYSGSRYNVGYMDDFGGIVIRTFN
CEEEEEEEEECCCCCCCCCCCCEEEECCCCHHHCCCCCCCCEEECCCCCCCCCEEEEEEC
CLSAECQIQPAEKRR
CCCCEEEECCHHCCC
>Mature Secondary Structure
MKDINSMIWRQQRLWAKTALFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCEEEEEECCC
PSSPYLAQSWLENTKGQKIESPLVALPPMQRIDAGQKSQVRIMKLPDADKLPTDRETLFY
CCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEE
FNVREIPPQSEMNNVVQIAIQNRIKLFYRPMAIKANYSDIWQEKLQISKQVGGLKINNPT
EEEECCCCHHHHHHHEEHHHHHCEEEEEECEEEECCHHHHHHHHHHHHHHHCCEEECCCC
PYYITLAYLSQNEKGNFPGFDSVMIAPFGTEFVKTPGYSGSRYNVGYMDDFGGIVIRTFN
CEEEEEEEEECCCCCCCCCCCCEEEECCCCHHHCCCCCCCCEEECCCCCCCCCEEEEEEC
CLSAECQIQPAEKRR
CCCCEEEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]