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The map label for this gene is ykoC [H]

Identifier: 169833477

GI number: 169833477

Start: 546664

End: 547494

Strand: Direct

Name: ykoC [H]

Synonym: SPH_0597

Alternate gene names: 169833477

Gene position: 546664-547494 (Clockwise)

Preceding gene: 169833930

Following gene: 169833898

Centisome position: 24.34

GC content: 40.91

Gene sequence:

>831_bases
ATGCAAGCTAAATTAATCGGTTACCAGCATAGAGATACTGTGATTCATCGCTTGTCAGGAGCTGGGAAACTTCTCTTTTT
CATTCTGGTATCATTGGCGGCCATGATTAGCTATGATACCAGAATGCTCTTGCTGATTGCCATCTTTTCAGTCTTTCTCC
TCTATTTATCAGAAATTCGCTTTAAAGATGTTTCCTTTGTAGCCGTTTTTGCGACGGTATTTGCCGTTTTAAACGTTTTG
ATGGTCTATCTCTTTTCTCCCGAGTATGGGGTTGGACTTTATGGAGAGAGAAGTGTGATTTGGCAGGGAATCGGTGTCTA
CACTCTAACCAGCCAGGAGCTCTTTTATCTGCTAAATTTGGCCATTAAGTATCTTTGCACCATTCCTCTGGCTATTATCT
TTTTGATGACAACCCATCCTAGTCAGTTTGCTTCCAGTTTAAATCAAATTGGTGTGCCCTATAAGATTGCTTATTCTGTC
AGCCTGACCTTGCGCTATATTCCAGATTTGCAGGAAGAATTCTTTACTATCAAGATGTCTCAGGAGGCGCGTGGGATGGA
ATTATCCAAGAAAGCTTCTCTTATGCAACGAATCAAAGGCAATCTGCTCATTATTACGCCCTTGATTTTTAGCTCGCTAG
AACGCATTGATACCATTGCGACTGCCATGGAGCTTCGCCGTTTTGGGAAAGAGAAAAAACGCACATGGTATAGTTATCAG
GCCTTGAAAAAAGGAGACTATATTACCTTTCTCTTGGCAACCTTGTTTTTAGTAGCTAGTTTACTACTTATCTTGCAGAA
TCAGGGACGATTTTACAACCCTTGGAAATAA

Upstream 100 bases:

>100_bases
TAAAAGCCAATCTAAAAGAAACCTCCATCTTTAACTTGGCTAAGAAACTAGATGTGGATCCACTGGATTTAACGGCATTT
TACAAAGAAAGGAGAGAGGG

Downstream 100 bases:

>100_bases
CTTGAAAAAATTGAAAAAATCAAGTCGTTTCTATTGACAATGATTCTGAAAGTGTTATACTAAGAAAGTAGTTTCGCTGA
TTTACTTCAAACCTGTTGTG

Product: cobalt transport family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MQAKLIGYQHRDTVIHRLSGAGKLLFFILVSLAAMISYDTRMLLLIAIFSVFLLYLSEIRFKDVSFVAVFATVFAVLNVL
MVYLFSPEYGVGLYGERSVIWQGIGVYTLTSQELFYLLNLAIKYLCTIPLAIIFLMTTHPSQFASSLNQIGVPYKIAYSV
SLTLRYIPDLQEEFFTIKMSQEARGMELSKKASLMQRIKGNLLIITPLIFSSLERIDTIATAMELRRFGKEKKRTWYSYQ
ALKKGDYITFLLATLFLVASLLLILQNQGRFYNPWK

Sequences:

>Translated_276_residues
MQAKLIGYQHRDTVIHRLSGAGKLLFFILVSLAAMISYDTRMLLLIAIFSVFLLYLSEIRFKDVSFVAVFATVFAVLNVL
MVYLFSPEYGVGLYGERSVIWQGIGVYTLTSQELFYLLNLAIKYLCTIPLAIIFLMTTHPSQFASSLNQIGVPYKIAYSV
SLTLRYIPDLQEEFFTIKMSQEARGMELSKKASLMQRIKGNLLIITPLIFSSLERIDTIATAMELRRFGKEKKRTWYSYQ
ALKKGDYITFLLATLFLVASLLLILQNQGRFYNPWK
>Mature_276_residues
MQAKLIGYQHRDTVIHRLSGAGKLLFFILVSLAAMISYDTRMLLLIAIFSVFLLYLSEIRFKDVSFVAVFATVFAVLNVL
MVYLFSPEYGVGLYGERSVIWQGIGVYTLTSQELFYLLNLAIKYLCTIPLAIIFLMTTHPSQFASSLNQIGVPYKIAYSV
SLTLRYIPDLQEEFFTIKMSQEARGMELSKKASLMQRIKGNLLIITPLIFSSLERIDTIATAMELRRFGKEKKRTWYSYQ
ALKKGDYITFLLATLFLVASLLLILQNQGRFYNPWK

Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 31635; Mature: 31635

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAKLIGYQHRDTVIHRLSGAGKLLFFILVSLAAMISYDTRMLLLIAIFSVFLLYLSEIR
CCCCEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKDVSFVAVFATVFAVLNVLMVYLFSPEYGVGLYGERSVIWQGIGVYTLTSQELFYLLNL
HCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEECCCEEEECHHHHHHHHHH
AIKYLCTIPLAIIFLMTTHPSQFASSLNQIGVPYKIAYSVSLTLRYIPDLQEEFFTIKMS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEEEHEECCCCHHHHHEEEEEC
QEARGMELSKKASLMQRIKGNLLIITPLIFSSLERIDTIATAMELRRFGKEKKRTWYSYQ
CCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
ALKKGDYITFLLATLFLVASLLLILQNQGRFYNPWK
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MQAKLIGYQHRDTVIHRLSGAGKLLFFILVSLAAMISYDTRMLLLIAIFSVFLLYLSEIR
CCCCEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKDVSFVAVFATVFAVLNVLMVYLFSPEYGVGLYGERSVIWQGIGVYTLTSQELFYLLNL
HCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEECCCEEEECHHHHHHHHHH
AIKYLCTIPLAIIFLMTTHPSQFASSLNQIGVPYKIAYSVSLTLRYIPDLQEEFFTIKMS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEEEHEECCCCHHHHHEEEEEC
QEARGMELSKKASLMQRIKGNLLIITPLIFSSLERIDTIATAMELRRFGKEKKRTWYSYQ
CCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
ALKKGDYITFLLATLFLVASLLLILQNQGRFYNPWK
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]