Click here to switch to the map view.

The map label for this gene is yxlF [H]

Identifier: 169825251

GI number: 169825251

Start: 1725359

End: 1726006

Strand: Direct

Name: yxlF [H]

Synonym: FMG_1554

Alternate gene names: 169825251

Gene position: 1725359-1726006 (Clockwise)

Preceding gene: 169825249

Following gene: 169825252

Centisome position: 95.98

GC content: 29.01

Gene sequence:

>648_bases
ATGTTTATACGAAAAATAAATCAGAAATACAAAAATTTCGAGTTAGACATCGAAAGTCTAGAAATAGGAAACAATAAAAT
TATAGGACTGATTGGAGAAAACGGTGCTGGTAAGACAACTTTGATGGATGTATTATCCGGAATGATAAAAGCAAACGCAA
GTTTTGATGTCCAAGATTATAACGAAAATGATATTTTATACATACCTTCCCAAATATCTCCGTATTATTTTTTAACAGTA
AGTGAATTTTGTAAAATTGTAAATGAATACTCCCCTTCCGGTAAAACGTCCGAAGATTTAATAGTTGAACTTGGACTAGA
AGACAAGAAAGATACTTTAATTTCTGAATTATCTGAAGGAATGAAGAAAAAGTTAACTCTGATTAACATTTTAACAGGTG
ATTATTCCCTCATAATTATGGACGAACCATTTAATAGTATCGATCTGAAATATTCTTATGAAATCAAGAAATTAATCCTT
CAATTGAAGGAAAAGTCTACAATTTTGATTTCATCACATATTTTAGACAGCCTTATTGATATATGTGATGAGTTTGTGCT
TTTGAAAAATGGTAAGGTAAAAAAAGTATTCGCAAATTCAAAAGATAAAAAGCAACTGGAGGACGAGATTTTTGAAAGAA
ATATTTAA

Upstream 100 bases:

>100_bases
ATTGAAATAATTTATAAATAGGCACTTAGCGTGTGTGACTTTTTTACAAATATATATTATTATATATATAACTAGTATTT
GATTACGTTAAGGAGATCAC

Downstream 100 bases:

>100_bases
ATTGGATATGAAACTACGTTTTAAGGAAATAAAAATAGATAAAATATCAGGTGCAATCCAATTCGTTTTGATAATCTCAG
CGATTTTTTTGTTTTTAAAA

Product: ribose/galactoside ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MFIRKINQKYKNFELDIESLEIGNNKIIGLIGENGAGKTTLMDVLSGMIKANASFDVQDYNENDILYIPSQISPYYFLTV
SEFCKIVNEYSPSGKTSEDLIVELGLEDKKDTLISELSEGMKKKLTLINILTGDYSLIIMDEPFNSIDLKYSYEIKKLIL
QLKEKSTILISSHILDSLIDICDEFVLLKNGKVKKVFANSKDKKQLEDEIFERNI

Sequences:

>Translated_215_residues
MFIRKINQKYKNFELDIESLEIGNNKIIGLIGENGAGKTTLMDVLSGMIKANASFDVQDYNENDILYIPSQISPYYFLTV
SEFCKIVNEYSPSGKTSEDLIVELGLEDKKDTLISELSEGMKKKLTLINILTGDYSLIIMDEPFNSIDLKYSYEIKKLIL
QLKEKSTILISSHILDSLIDICDEFVLLKNGKVKKVFANSKDKKQLEDEIFERNI
>Mature_215_residues
MFIRKINQKYKNFELDIESLEIGNNKIIGLIGENGAGKTTLMDVLSGMIKANASFDVQDYNENDILYIPSQISPYYFLTV
SEFCKIVNEYSPSGKTSEDLIVELGLEDKKDTLISELSEGMKKKLTLINILTGDYSLIIMDEPFNSIDLKYSYEIKKLIL
QLKEKSTILISSHILDSLIDICDEFVLLKNGKVKKVFANSKDKKQLEDEIFERNI

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI45446740, Length=206, Percent_Identity=28.1553398058252, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI47078218, Length=206, Percent_Identity=28.1553398058252, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI105990541, Length=185, Percent_Identity=26.4864864864865, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI153792144, Length=213, Percent_Identity=28.6384976525822, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI27477115, Length=191, Percent_Identity=29.3193717277487, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI27436953, Length=215, Percent_Identity=26.9767441860465, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI150417984, Length=189, Percent_Identity=27.5132275132275, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI30795238, Length=194, Percent_Identity=26.8041237113402, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI27881501, Length=194, Percent_Identity=26.8041237113402, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1789593, Length=213, Percent_Identity=23.943661971831, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786345, Length=198, Percent_Identity=25.2525252525253, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790190, Length=197, Percent_Identity=25.3807106598985, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081782, Length=182, Percent_Identity=30.2197802197802, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787164, Length=232, Percent_Identity=19.3965517241379, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1786319, Length=203, Percent_Identity=24.6305418719212, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=218, Percent_Identity=29.3577981651376, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115533608, Length=203, Percent_Identity=31.0344827586207, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71983523, Length=180, Percent_Identity=29.4444444444444, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=180, Percent_Identity=29.4444444444444, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71983510, Length=180, Percent_Identity=29.4444444444444, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=177, Percent_Identity=26.5536723163842, Blast_Score=70, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17555800, Length=184, Percent_Identity=30.4347826086957, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320296, Length=196, Percent_Identity=26.0204081632653, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI28574150, Length=189, Percent_Identity=25.3968253968254, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI116007328, Length=189, Percent_Identity=25.3968253968254, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24666092, Length=203, Percent_Identity=27.5862068965517, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI221512771, Length=195, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24643674, Length=192, Percent_Identity=27.6041666666667, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24528; Mature: 24528

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIRKINQKYKNFELDIESLEIGNNKIIGLIGENGAGKTTLMDVLSGMIKANASFDVQDY
CCHHHHHHHHCCEEEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEC
NENDILYIPSQISPYYFLTVSEFCKIVNEYSPSGKTSEDLIVELGLEDKKDTLISELSEG
CCCCEEEECCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
MKKKLTLINILTGDYSLIIMDEPFNSIDLKYSYEIKKLILQLKEKSTILISSHILDSLID
HHHHEEEEEEEECCEEEEEEECCCCCEEEEEHHHHHHHHHHHHCCCEEEEHHHHHHHHHH
ICDEFVLLKNGKVKKVFANSKDKKQLEDEIFERNI
HHHHEEEECCCCEEEEECCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MFIRKINQKYKNFELDIESLEIGNNKIIGLIGENGAGKTTLMDVLSGMIKANASFDVQDY
CCHHHHHHHHCCEEEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEC
NENDILYIPSQISPYYFLTVSEFCKIVNEYSPSGKTSEDLIVELGLEDKKDTLISELSEG
CCCCEEEECCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
MKKKLTLINILTGDYSLIIMDEPFNSIDLKYSYEIKKLILQLKEKSTILISSHILDSLID
HHHHEEEEEEEECCEEEEEEECCCCCEEEEEHHHHHHHHHHHHCCCEEEEHHHHHHHHHH
ICDEFVLLKNGKVKKVFANSKDKKQLEDEIFERNI
HHHHEEEECCCCEEEEECCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]