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The map label for this gene is yocD [H]

Identifier: 169824994

GI number: 169824994

Start: 1409593

End: 1410621

Strand: Direct

Name: yocD [H]

Synonym: FMG_1297

Alternate gene names: 169824994

Gene position: 1409593-1410621 (Clockwise)

Preceding gene: 169824993

Following gene: 169824995

Centisome position: 78.42

GC content: 29.45

Gene sequence:

>1029_bases
ATGATAAAGAAAATAGGAGTTGTGAGCTTATCAAGTGGTGTTTTGGGAGAAAGTTTTGTTGAGCATGAAATAAAAATAGG
AATAGATAGATTAAATAAGTTAGGAGTCGAAATAGAATTTTTACCTAATTCTTTGAAAGGCATAGACTTTTTAAAAAATA
ATCCAGAACTTAGGGCAGATGATTTGCTGCTTGCTTTTGAAGATGACACTATTGATATGATTTTATGTGCTATTGGTGGA
GAAGATACCTACAGATTAGCTCCTTATTTATTTGAAAGAGATAGATTAAAAAATATTGTTAAACAAAAACTTTTTTTAGG
CTTTTCTGACTCAACAATGAATCACTTTATGCTAAATAAGCTTGGCATAAAAACATTTTATGGTCAGGCTTTCTTGCCAG
ATGTATGTGAACTATCTGCTAATATGTTAGCTTATACAGAAAAATACTTTTTGGAACTTATAAAAACAGGAAAAATAAAT
GAGATACATCCTAGTGAAGTTTGGTATGAGGCAAGGGAAGATTTTAGCAAGAAAGCTATAGGAATAGAAATGAAAAGCCA
TCCTAATACCGGTTTTGAGCTTTTAAGAGGAAATCCTATATTTAGTGGAAAAATTTTAGGCGGATGCATAGAAACAATAT
ATGATATGTTCGATAATTCTAGATTTAACGATACAGTAGAAATTTGTAGCAAATATAATTTATTTCCAACCCTTGAGGAA
TGGGAGAATAAGATTTTACTAATAGAATCAAGCGAAGAAAAATCAAAACCAGATTTATATAGGAAAATGATACGTGCTCT
AAAAAACTACGGAATATTTGATAAATTATCAGGAATACTAGTAGGGAAACCTCAAAATGAAATCTATTACGAGGAGTATA
AATCTATTTTATTAGAAGAAATCACCAATAAAGATTTACCTATTGTCTATAATATAAATATTGGGCACTCAACTCCAAGA
TGTATAATTCCTTTTGGGGTAGAAGCAGAAGTAAATGTAAATAAACAAACTATATCCTTTAATTATTAA

Upstream 100 bases:

>100_bases
ATCAGTTCCCAAGGACTTACCACTGCGAAGCTGTTGTGCTTCTATCAAGAAAATAAGAATATAGGATATTTTTACTTTAT
TTAGAAATTTGGAGGAAATA

Downstream 100 bases:

>100_bases
ACAAAATTGATCTGGCTATGAATTGTTTTTTCTACTTTAGAATGATTTAGTAAATTACAAGATGTTTATTGATCGGCATA
TTTCCTCATACGAGGCTTTT

Product: putative bacteriocin immunity protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MIKKIGVVSLSSGVLGESFVEHEIKIGIDRLNKLGVEIEFLPNSLKGIDFLKNNPELRADDLLLAFEDDTIDMILCAIGG
EDTYRLAPYLFERDRLKNIVKQKLFLGFSDSTMNHFMLNKLGIKTFYGQAFLPDVCELSANMLAYTEKYFLELIKTGKIN
EIHPSEVWYEAREDFSKKAIGIEMKSHPNTGFELLRGNPIFSGKILGGCIETIYDMFDNSRFNDTVEICSKYNLFPTLEE
WENKILLIESSEEKSKPDLYRKMIRALKNYGIFDKLSGILVGKPQNEIYYEEYKSILLEEITNKDLPIVYNINIGHSTPR
CIIPFGVEAEVNVNKQTISFNY

Sequences:

>Translated_342_residues
MIKKIGVVSLSSGVLGESFVEHEIKIGIDRLNKLGVEIEFLPNSLKGIDFLKNNPELRADDLLLAFEDDTIDMILCAIGG
EDTYRLAPYLFERDRLKNIVKQKLFLGFSDSTMNHFMLNKLGIKTFYGQAFLPDVCELSANMLAYTEKYFLELIKTGKIN
EIHPSEVWYEAREDFSKKAIGIEMKSHPNTGFELLRGNPIFSGKILGGCIETIYDMFDNSRFNDTVEICSKYNLFPTLEE
WENKILLIESSEEKSKPDLYRKMIRALKNYGIFDKLSGILVGKPQNEIYYEEYKSILLEEITNKDLPIVYNINIGHSTPR
CIIPFGVEAEVNVNKQTISFNY
>Mature_342_residues
MIKKIGVVSLSSGVLGESFVEHEIKIGIDRLNKLGVEIEFLPNSLKGIDFLKNNPELRADDLLLAFEDDTIDMILCAIGG
EDTYRLAPYLFERDRLKNIVKQKLFLGFSDSTMNHFMLNKLGIKTFYGQAFLPDVCELSANMLAYTEKYFLELIKTGKIN
EIHPSEVWYEAREDFSKKAIGIEMKSHPNTGFELLRGNPIFSGKILGGCIETIYDMFDNSRFNDTVEICSKYNLFPTLEE
WENKILLIESSEEKSKPDLYRKMIRALKNYGIFDKLSGILVGKPQNEIYYEEYKSILLEEITNKDLPIVYNINIGHSTPR
CIIPFGVEAEVNVNKQTISFNY

Specific function: Unknown

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 39199; Mature: 39199

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKIGVVSLSSGVLGESFVEHEIKIGIDRLNKLGVEIEFLPNSLKGIDFLKNNPELRAD
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHCCCCCCCCC
DLLLAFEDDTIDMILCAIGGEDTYRLAPYLFERDRLKNIVKQKLFLGFSDSTMNHFMLNK
CEEEEEECCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LGIKTFYGQAFLPDVCELSANMLAYTEKYFLELIKTGKINEIHPSEVWYEAREDFSKKAI
HCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEE
GIEMKSHPNTGFELLRGNPIFSGKILGGCIETIYDMFDNSRFNDTVEICSKYNLFPTLEE
EEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHH
WENKILLIESSEEKSKPDLYRKMIRALKNYGIFDKLSGILVGKPQNEIYYEEYKSILLEE
HCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHCCEEEECCCCCHHHHHHHHHHHHH
ITNKDLPIVYNINIGHSTPRCIIPFGVEAEVNVNKQTISFNY
HCCCCCCEEEEEECCCCCCCEEEEECCEEEEECCEEEEEECC
>Mature Secondary Structure
MIKKIGVVSLSSGVLGESFVEHEIKIGIDRLNKLGVEIEFLPNSLKGIDFLKNNPELRAD
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHCCCCCCCCC
DLLLAFEDDTIDMILCAIGGEDTYRLAPYLFERDRLKNIVKQKLFLGFSDSTMNHFMLNK
CEEEEEECCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LGIKTFYGQAFLPDVCELSANMLAYTEKYFLELIKTGKINEIHPSEVWYEAREDFSKKAI
HCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEE
GIEMKSHPNTGFELLRGNPIFSGKILGGCIETIYDMFDNSRFNDTVEICSKYNLFPTLEE
EEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHH
WENKILLIESSEEKSKPDLYRKMIRALKNYGIFDKLSGILVGKPQNEIYYEEYKSILLEE
HCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHCCEEEECCCCCHHHHHHHHHHHHH
ITNKDLPIVYNINIGHSTPRCIIPFGVEAEVNVNKQTISFNY
HCCCCCCEEEEEECCCCCCCEEEEECCEEEEECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]