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The map label for this gene is ycaJ [C]

Identifier: 169824318

GI number: 169824318

Start: 685098

End: 686393

Strand: Direct

Name: ycaJ [C]

Synonym: FMG_0621

Alternate gene names: 169824318

Gene position: 685098-686393 (Clockwise)

Preceding gene: 169824317

Following gene: 169824319

Centisome position: 38.11

GC content: 31.33

Gene sequence:

>1296_bases
TTGGATTTATTTGAATATAATTTACAATTACAAAAAGAAAATAGTTCACCGTTAGCAAATAGACTTAGACCAAAAAGTTT
GGATAAATATTTTGGACAATCTCACGTGGTTGGCGAAGGAAAGCTTTTGAATAGATTGATAAAGGCTGATAAAATTCCTT
CTATGATTTTTTACGGACCACCTGGAACTGGAAAAACAACCTTGGCAGAAATTATTTCGAATCAAACTAATTCTTTATTC
GAAAGATTATCTGCGATTTCAAATGGAGTTAAAGACATTAGAGAAGTTATTTCAACTGCTAAGACTAATTTGAGCATGTA
TAACAAAAAAACTGTTTTGTTTATTGATGAAATTCATAGATTTAACAAATCGCAACAAGACGCATTGTTAGGATATGTTG
AAGATGGAACAATTACTTTGATAGGTGCCACAACAGAAAATCCATTCTTTGAAGTGAACAAAGCTCTTTTATCTAGATGT
CAAATTATCGAATTGAAACCGTTGACTGATAATGATATTAGAAATATTATAGAAAACGCACTTACAGAAGATAAAAAATT
AAAAGAAATGAACATTCAAATAGATGAAAAAGCAATTGATGTTCTCGTAAATTCTGCAAATGGGGATGCGAGAAGTGCAT
TGAATGCTCTAGAGATTGCAGTCGAGAGCACAGATCAAGTTAATGGTTGCTTAATTATAGATGAAGATGCAATTAAAAAT
TCTGTATTTAAACCTGTTTTGAAATACGATAAAGAAGAAGATCACTATAATGTTATATCTGCATTTATTAAATCTATGAG
AGGTTCTGATATTGACGCAGCTTTATATTACTTAGCAAGAATGATTGAAAGCGGTGAAGATCCTAAATTTATTGCCAGAA
GAATGGTGATTTTTGCATCAGAAGATATTGGACTCGCAAATCCTGAGGCTTTGACTGTGGCTATTAATGTATTTAACGCA
GTTAATTTAATAGGGCTACCAGAATGTAGGATAAATTTATCGAATGGTGTAATCTATCTTGCATCAAGTGAAAAATCTAA
TACATCATATATAGCGATCGATAAGGCATTGGAAGATATTCGCCAAAACAAGATTTACGATGTTCCTAGTCATTTAAAAG
ACGCTCACTATTATGGAGCAAAATCGTTGAATAGAGGTCTAGGATACAAATATCCACACAGTGACGATTCGTATCAACAA
TACTTACCTGACGAATTGAAAAATCAAAAATATTACGATCCAAAAGATATTGGATTTGAAAGCAAAATATATAAAAAAAT
AAGGAGTAAAGAATGA

Upstream 100 bases:

>100_bases
TGAATAAGGTCGGGTAAATATCCGACCTTTAATTTTTATTTAACGATATTTAATTTTTATGGTAAGATATAAATAAAATA
AATGTTAAAGGGGAAATATT

Downstream 100 bases:

>100_bases
TATTAATTAAAGATTTGATTAAAGATTACGAAAAGTATTCTGACAAAGAAGTTGAAGTTGGAGGTTGGATTAAAAACTCA
AGATTTAGTAAAAATGTTGG

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MDLFEYNLQLQKENSSPLANRLRPKSLDKYFGQSHVVGEGKLLNRLIKADKIPSMIFYGPPGTGKTTLAEIISNQTNSLF
ERLSAISNGVKDIREVISTAKTNLSMYNKKTVLFIDEIHRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKALLSRC
QIIELKPLTDNDIRNIIENALTEDKKLKEMNIQIDEKAIDVLVNSANGDARSALNALEIAVESTDQVNGCLIIDEDAIKN
SVFKPVLKYDKEEDHYNVISAFIKSMRGSDIDAALYYLARMIESGEDPKFIARRMVIFASEDIGLANPEALTVAINVFNA
VNLIGLPECRINLSNGVIYLASSEKSNTSYIAIDKALEDIRQNKIYDVPSHLKDAHYYGAKSLNRGLGYKYPHSDDSYQQ
YLPDELKNQKYYDPKDIGFESKIYKKIRSKE

Sequences:

>Translated_431_residues
MDLFEYNLQLQKENSSPLANRLRPKSLDKYFGQSHVVGEGKLLNRLIKADKIPSMIFYGPPGTGKTTLAEIISNQTNSLF
ERLSAISNGVKDIREVISTAKTNLSMYNKKTVLFIDEIHRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKALLSRC
QIIELKPLTDNDIRNIIENALTEDKKLKEMNIQIDEKAIDVLVNSANGDARSALNALEIAVESTDQVNGCLIIDEDAIKN
SVFKPVLKYDKEEDHYNVISAFIKSMRGSDIDAALYYLARMIESGEDPKFIARRMVIFASEDIGLANPEALTVAINVFNA
VNLIGLPECRINLSNGVIYLASSEKSNTSYIAIDKALEDIRQNKIYDVPSHLKDAHYYGAKSLNRGLGYKYPHSDDSYQQ
YLPDELKNQKYYDPKDIGFESKIYKKIRSKE
>Mature_431_residues
MDLFEYNLQLQKENSSPLANRLRPKSLDKYFGQSHVVGEGKLLNRLIKADKIPSMIFYGPPGTGKTTLAEIISNQTNSLF
ERLSAISNGVKDIREVISTAKTNLSMYNKKTVLFIDEIHRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKALLSRC
QIIELKPLTDNDIRNIIENALTEDKKLKEMNIQIDEKAIDVLVNSANGDARSALNALEIAVESTDQVNGCLIIDEDAIKN
SVFKPVLKYDKEEDHYNVISAFIKSMRGSDIDAALYYLARMIESGEDPKFIARRMVIFASEDIGLANPEALTVAINVFNA
VNLIGLPECRINLSNGVIYLASSEKSNTSYIAIDKALEDIRQNKIYDVPSHLKDAHYYGAKSLNRGLGYKYPHSDDSYQQ
YLPDELKNQKYYDPKDIGFESKIYKKIRSKE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=43.0839002267574, Blast_Score=338, Evalue=7e-93,
Organism=Homo sapiens, GI18426904, Length=435, Percent_Identity=39.3103448275862, Blast_Score=288, Evalue=9e-78,
Organism=Homo sapiens, GI6677723, Length=210, Percent_Identity=27.1428571428571, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI194306571, Length=209, Percent_Identity=26.7942583732057, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI194306567, Length=209, Percent_Identity=26.7942583732057, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI1787119, Length=419, Percent_Identity=42.9594272076372, Blast_Score=339, Evalue=2e-94,
Organism=Escherichia coli, GI1788167, Length=151, Percent_Identity=31.7880794701987, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786676, Length=243, Percent_Identity=25.9259259259259, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71986063, Length=253, Percent_Identity=27.6679841897233, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=450, Percent_Identity=38.2222222222222, Blast_Score=261, Evalue=2e-70,
Organism=Saccharomyces cerevisiae, GI6324039, Length=277, Percent_Identity=28.5198555956679, Blast_Score=92, Evalue=1e-19,
Organism=Drosophila melanogaster, GI19921076, Length=245, Percent_Identity=26.1224489795918, Blast_Score=76, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48550; Mature: 48550

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFEYNLQLQKENSSPLANRLRPKSLDKYFGQSHVVGEGKLLNRLIKADKIPSMIFYGP
CCCEEECEEEEECCCCCHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
PGTGKTTLAEIISNQTNSLFERLSAISNGVKDIREVISTAKTNLSMYNKKTVLFIDEIHR
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHH
FNKSQQDALLGYVEDGTITLIGATTENPFFEVNKALLSRCQIIELKPLTDNDIRNIIENA
CCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
LTEDKKLKEMNIQIDEKAIDVLVNSANGDARSALNALEIAVESTDQVNGCLIIDEDAIKN
HCCCHHHHHCCCEECHHHEEHHEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHH
SVFKPVLKYDKEEDHYNVISAFIKSMRGSDIDAALYYLARMIESGEDPKFIARRMVIFAS
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHEEEC
EDIGLANPEALTVAINVFNAVNLIGLPECRINLSNGVIYLASSEKSNTSYIAIDKALEDI
CCCCCCCCCEEEEEEEHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCEEEEHHHHHHH
RQNKIYDVPSHLKDAHYYGAKSLNRGLGYKYPHSDDSYQQYLPDELKNQKYYDPKDIGFE
HHCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCCHH
SKIYKKIRSKE
HHHHHHHHCCC
>Mature Secondary Structure
MDLFEYNLQLQKENSSPLANRLRPKSLDKYFGQSHVVGEGKLLNRLIKADKIPSMIFYGP
CCCEEECEEEEECCCCCHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
PGTGKTTLAEIISNQTNSLFERLSAISNGVKDIREVISTAKTNLSMYNKKTVLFIDEIHR
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHH
FNKSQQDALLGYVEDGTITLIGATTENPFFEVNKALLSRCQIIELKPLTDNDIRNIIENA
CCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
LTEDKKLKEMNIQIDEKAIDVLVNSANGDARSALNALEIAVESTDQVNGCLIIDEDAIKN
HCCCHHHHHCCCEECHHHEEHHEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHH
SVFKPVLKYDKEEDHYNVISAFIKSMRGSDIDAALYYLARMIESGEDPKFIARRMVIFAS
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHEEEC
EDIGLANPEALTVAINVFNAVNLIGLPECRINLSNGVIYLASSEKSNTSYIAIDKALEDI
CCCCCCCCCEEEEEEEHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCEEEEHHHHHHH
RQNKIYDVPSHLKDAHYYGAKSLNRGLGYKYPHSDDSYQQYLPDELKNQKYYDPKDIGFE
HHCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCCHH
SKIYKKIRSKE
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]