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The map label for this gene is eccD4 [H]

Identifier: 169630836

GI number: 169630836

Start: 3813717

End: 3815252

Strand: Direct

Name: eccD4 [H]

Synonym: MAB_3757

Alternate gene names: 169630836

Gene position: 3813717-3815252 (Clockwise)

Preceding gene: 169630828

Following gene: 169630837

Centisome position: 75.26

GC content: 66.99

Gene sequence:

>1536_bases
ATGACACATGCGCAGTCGGGCGCCGAGCAACGGTCGGCGGTTCTCGAACTGTGCCGCGTTTCCATTCAGGCTGAGCGAAC
CCAGGTAGACCTGGCGCTGCCGACGAGTGTTCCGCTGGCCCTCTTGGTGGGATCGATCGTCGACATCATCAACCAGCATG
TCGGTGTCCCCGAGCTGACCAGCCCGGAGGATGCCGTGGAAACGCATTGGCGTTTGTCCCGGCCCGGCCAGCCACCCCTG
CAGATGTCCAGCACCCTCGGCGAGCTGGAGGTTCGCGACGGCGATCTGCTGATTCTCACCCGGTCCGATGTCGCGGCGCC
GGATCCGCTGTTCGACGATGTCTTTCTGGCGGTGTCGACCTTCCGTACCGTCTCGGCTCATCCGTGGAGCCGAAATGCCG
CCCGCATCCTGGGTGCCTCGGTCTGCGGGCTCTCCGCATTATTGGGTGCCACCGCACTGCTGCGCGCCGGAGCCACCAAT
CCCGGTCTGCTCCTTCCCATCATCGCAGTGGCGATAGCGCTGGTCGCGATGACCGCGGCGGTGTTCGCGAACAGGGTCTA
TGACGATTCGCTCGCGTCGGTGATGCTCAGCCACTGCGCCGTGGGCTTTTCCGCCGTTGCGGGGGCGCTTTTCGTACCCG
GCAAGTACGGCGCTCCCCACGCCATGTTGGCGCTCATGGTGGCGATGGTGGTGTCCATTCTCGCCATGCGGGCGACCGGC
ACCGGCACCACGTCACTGGTCGCGGTGGCCTCGGCATCGTTTCTGGGGTTCGCCGCGGCGCTGGGTTACGTGCTGTTCGA
ACCGCCGATTTACAGCCTCGGAGCCGTGCTCGGCTCCGTAGGGATCTGCGCGGTGGCCCTCTCACCGCGGGTCGCGATGG
TCCTCGCCCGGCTGCCCCTGCCTCCGGTGCCCACCCAGGGTGCGCCATCTCGTCCCGAACATTCCACGGCACCAATCGAA
GCCATCGAAGGTCTGGACGGACTTGATACCGAGGGTGACGACGTAGAGGACGCCACGGCACTGCCCCCGCTCCCCGACCT
CCGCGAGAAAGCGCTACGGGCCCATGCCGTGCTGACCGGTTTGGTGTGCGGTACCTCGGCCGTCACCGCGGTGGGTGCCA
TGCTGGCGGCCCTGACCTTCTCCGGTGCGGGCGGACATCATCCCACCGGAGCCCATCGGTTGAGCGGCGTGGTGCTGGCC
GGCCTAATCGCGCTGGCGATGATGCTCCGCGCACGTTCACATGCCGACCTGGCGCAGACCGTGGCCATCAACCTGGGCGG
CATCGCCATTCCCGCGGCCGCATTCGCGTTCGTCGCGGTCGCGTACCCGACGGCCGCGGTGTTCACCACCGTGCTGGCGG
CGATCGCGGCCGGATCGGCCATCGCGCTGGGCTTCCTGGTGTCGGCACGCAAGTACTCGCCCGTTGCCCGCCGCACGGTG
GAGATCATCGAATACATCGCGCTGTCCCTGATTGTTCCGATCGCCGTCTGGGTGTGCGGTGTGTACAGCGCCGTGCGGGG
ATTGAACCTGCCATGA

Upstream 100 bases:

>100_bases
GCGCCGAACCGCTGGCGGCGTTTAGTCGCGTTCGGCTAGTGTGCATGCGCAAAGATCAATGACGCAGGGGCCAGGCCGGG
GGCCAGCTAGGGGGCACAGC

Downstream 100 bases:

>100_bases
GCCTCGGCGTGGCCCGCCGTATCGCCACCGCTGGAGCCGTCGTGATGTTGGCGATGTCATCACAGCTGGCTACGGGCTCG
ATGCACGTAATGGCGACGGC

Product: hypothetical protein

Products: NA

Alternate protein names: ESX conserved component D4; Type VII secretion system protein eccD4; T7SS protein eccD4 [H]

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MTHAQSGAEQRSAVLELCRVSIQAERTQVDLALPTSVPLALLVGSIVDIINQHVGVPELTSPEDAVETHWRLSRPGQPPL
QMSSTLGELEVRDGDLLILTRSDVAAPDPLFDDVFLAVSTFRTVSAHPWSRNAARILGASVCGLSALLGATALLRAGATN
PGLLLPIIAVAIALVAMTAAVFANRVYDDSLASVMLSHCAVGFSAVAGALFVPGKYGAPHAMLALMVAMVVSILAMRATG
TGTTSLVAVASASFLGFAAALGYVLFEPPIYSLGAVLGSVGICAVALSPRVAMVLARLPLPPVPTQGAPSRPEHSTAPIE
AIEGLDGLDTEGDDVEDATALPPLPDLREKALRAHAVLTGLVCGTSAVTAVGAMLAALTFSGAGGHHPTGAHRLSGVVLA
GLIALAMMLRARSHADLAQTVAINLGGIAIPAAAFAFVAVAYPTAAVFTTVLAAIAAGSAIALGFLVSARKYSPVARRTV
EIIEYIALSLIVPIAVWVCGVYSAVRGLNLP

Sequences:

>Translated_511_residues
MTHAQSGAEQRSAVLELCRVSIQAERTQVDLALPTSVPLALLVGSIVDIINQHVGVPELTSPEDAVETHWRLSRPGQPPL
QMSSTLGELEVRDGDLLILTRSDVAAPDPLFDDVFLAVSTFRTVSAHPWSRNAARILGASVCGLSALLGATALLRAGATN
PGLLLPIIAVAIALVAMTAAVFANRVYDDSLASVMLSHCAVGFSAVAGALFVPGKYGAPHAMLALMVAMVVSILAMRATG
TGTTSLVAVASASFLGFAAALGYVLFEPPIYSLGAVLGSVGICAVALSPRVAMVLARLPLPPVPTQGAPSRPEHSTAPIE
AIEGLDGLDTEGDDVEDATALPPLPDLREKALRAHAVLTGLVCGTSAVTAVGAMLAALTFSGAGGHHPTGAHRLSGVVLA
GLIALAMMLRARSHADLAQTVAINLGGIAIPAAAFAFVAVAYPTAAVFTTVLAAIAAGSAIALGFLVSARKYSPVARRTV
EIIEYIALSLIVPIAVWVCGVYSAVRGLNLP
>Mature_510_residues
THAQSGAEQRSAVLELCRVSIQAERTQVDLALPTSVPLALLVGSIVDIINQHVGVPELTSPEDAVETHWRLSRPGQPPLQ
MSSTLGELEVRDGDLLILTRSDVAAPDPLFDDVFLAVSTFRTVSAHPWSRNAARILGASVCGLSALLGATALLRAGATNP
GLLLPIIAVAIALVAMTAAVFANRVYDDSLASVMLSHCAVGFSAVAGALFVPGKYGAPHAMLALMVAMVVSILAMRATGT
GTTSLVAVASASFLGFAAALGYVLFEPPIYSLGAVLGSVGICAVALSPRVAMVLARLPLPPVPTQGAPSRPEHSTAPIEA
IEGLDGLDTEGDDVEDATALPPLPDLREKALRAHAVLTGLVCGTSAVTAVGAMLAALTFSGAGGHHPTGAHRLSGVVLAG
LIALAMMLRARSHADLAQTVAINLGGIAIPAAAFAFVAVAYPTAAVFTTVLAAIAAGSAIALGFLVSARKYSPVARRTVE
IIEYIALSLIVPIAVWVCGVYSAVRGLNLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eccD/snm4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006707 [H]

Pfam domain/function: PF04600 DUF571 [H]

EC number: NA

Molecular weight: Translated: 52235; Mature: 52103

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHAQSGAEQRSAVLELCRVSIQAERTQVDLALPTSVPLALLVGSIVDIINQHVGVPELT
CCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC
SPEDAVETHWRLSRPGQPPLQMSSTLGELEVRDGDLLILTRSDVAAPDPLFDDVFLAVST
CCHHHHHHHHCCCCCCCCCHHHHHCCCCEEECCCCEEEEECCCCCCCCCHHHHHHHHHHH
FRTVSAHPWSRNAARILGASVCGLSALLGATALLRAGATNPGLLLPIIAVAIALVAMTAA
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
VFANRVYDDSLASVMLSHCAVGFSAVAGALFVPGKYGAPHAMLALMVAMVVSILAMRATG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
TGTTSLVAVASASFLGFAAALGYVLFEPPIYSLGAVLGSVGICAVALSPRVAMVLARLPL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCC
PPVPTQGAPSRPEHSTAPIEAIEGLDGLDTEGDDVEDATALPPLPDLREKALRAHAVLTG
CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LVCGTSAVTAVGAMLAALTFSGAGGHHPTGAHRLSGVVLAGLIALAMMLRARSHADLAQT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAINLGGIAIPAAAFAFVAVAYPTAAVFTTVLAAIAAGSAIALGFLVSARKYSPVARRTV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHH
EIIEYIALSLIVPIAVWVCGVYSAVRGLNLP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
THAQSGAEQRSAVLELCRVSIQAERTQVDLALPTSVPLALLVGSIVDIINQHVGVPELT
CCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC
SPEDAVETHWRLSRPGQPPLQMSSTLGELEVRDGDLLILTRSDVAAPDPLFDDVFLAVST
CCHHHHHHHHCCCCCCCCCHHHHHCCCCEEECCCCEEEEECCCCCCCCCHHHHHHHHHHH
FRTVSAHPWSRNAARILGASVCGLSALLGATALLRAGATNPGLLLPIIAVAIALVAMTAA
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
VFANRVYDDSLASVMLSHCAVGFSAVAGALFVPGKYGAPHAMLALMVAMVVSILAMRATG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
TGTTSLVAVASASFLGFAAALGYVLFEPPIYSLGAVLGSVGICAVALSPRVAMVLARLPL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCC
PPVPTQGAPSRPEHSTAPIEAIEGLDGLDTEGDDVEDATALPPLPDLREKALRAHAVLTG
CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LVCGTSAVTAVGAMLAALTFSGAGGHHPTGAHRLSGVVLAGLIALAMMLRARSHADLAQT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAINLGGIAIPAAAFAFVAVAYPTAAVFTTVLAAIAAGSAIALGFLVSARKYSPVARRTV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHH
EIIEYIALSLIVPIAVWVCGVYSAVRGLNLP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]