| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is alkB [H]
Identifier: 169630678
GI number: 169630678
Start: 3647825
End: 3649054
Strand: Reverse
Name: alkB [H]
Synonym: MAB_3598c
Alternate gene names: 169630678
Gene position: 3649054-3647825 (Counterclockwise)
Preceding gene: 169630679
Following gene: 169630677
Centisome position: 72.01
GC content: 61.38
Gene sequence:
>1230_bases ATGACGTCAAACCTGGAAACCGGTCCGGCGCAGCCCGCCGCGCAGTGGCGCGACCGCAAGCGCTACATGTGGCTGTACGG CATGATCCCGCCCACGGCGATCTTCATCGCGACGGCTTTGGTCTACGCGATGAACCAGCTCGGCTGGCAGCAGTTCTCGC CGGTCCTCTTCTGGATCGGCCCGCTGTTGGTCTACGTGATCCTGCCGCTGCTGGACCTGAATTTCGGGGCTGACGGTGAG AACGCACCCGATGAGGTGATGGAGGCGCTGGAGAACGACAAGTACTACCGCTATTGCACCTACATCTTCATTCCGTTCCA GTACGCGAGCTTCTTCCTGGGTGCCTATTACTTCACCGCCACCGACCTGAGCTGGATCGGCTTCGACCACGGCATCAGCT GGATTTCCAAGCTGGGGATCGCGGCGTCGATCGGCGTGCTGGGCGGGGTGGGTATCAACACCGCGCACGAGATGGGCCAC AAGAAGGAAGAGCTGGAGCGCTGGCTCTCGAAAATCACGCTGGCACAGACGTTCTATGGTCACTTTTACATCGAGCACAA CCGCGGCCATCACGTGCGCGTCGCCACTCCGGAAGACCCCGCCAGCTCGCGATTCGGTGAGACCTTCTGGGGCTTTTGGC CGCGCAGCGTGTGGGGCGCCCTGAGGTCCTCCTGGAACCTGGAGGCCACGCGCATGAAGCGGCTCAACCGCTTTGTGTTG CACCCGAGCAACGATGTGGTGAACGCCTGGCTGATGTCGGTGGTGCTGTTCGGGGTGACCATCGCCATCTTCGGCACCGC GGTCATTCCCTACCTCATCATCCAGGCCATCTACGGCTTCACCTTCCTAGAGACGGTGAACTATCTGGAGCACTACGGGT TGCTGCGGCAGAAGAACGGTGAGCGGTACGAACGCTGCACGCCGAAGCACAGCTGGAACTCCGATCACCTGGTGACCAAT ATCTTCCTGTACCACTTGCAGCGGCACAGCGATCATCACGCCAACCCCACGCGGCGCTATCAGACGCTGCGCAGCATGGA TGGCGCGCCGAACCTGCCCAGCGGATACGCCACCATGTTGACCCTGGCGTACTTCCCGCCACTGTGGCGCAAGGTCATGG ACCATCGAGTGCTCGATCACTATGACGGCGATATCACCCGGGTGAACATCCAGCCGAGTAAGCGCGCAAAGATTCTGGCC AGGTACGGCGTGACGGAAGGGGCGGCATAA
Upstream 100 bases:
>100_bases CAAATCATACTGATTTGTCTAGACACGCGACGAAACATGCCTTATCGTCAAATCTGTTCGGTGACGTACCTCACGCAGAT ATCGACGAGGAGAAGTGACG
Downstream 100 bases:
>100_bases AATGTCCGCCAAGATATCCCAGTACCGTTGCCCTATATGTCAGTACGTGTACGACGAGAGCCGGGGAGCCCCTCGTGAGG GGTTCCCGGCCGGGACGGCC
Product: putative alkane-1-monooxygenase AlkB (fatty acid omega-hydroxylase)
Products: NA
Alternate protein names: Alkane hydroxylase; AHs; Terminal alkane hydroxylase [H]
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MTSNLETGPAQPAAQWRDRKRYMWLYGMIPPTAIFIATALVYAMNQLGWQQFSPVLFWIGPLLVYVILPLLDLNFGADGE NAPDEVMEALENDKYYRYCTYIFIPFQYASFFLGAYYFTATDLSWIGFDHGISWISKLGIAASIGVLGGVGINTAHEMGH KKEELERWLSKITLAQTFYGHFYIEHNRGHHVRVATPEDPASSRFGETFWGFWPRSVWGALRSSWNLEATRMKRLNRFVL HPSNDVVNAWLMSVVLFGVTIAIFGTAVIPYLIIQAIYGFTFLETVNYLEHYGLLRQKNGERYERCTPKHSWNSDHLVTN IFLYHLQRHSDHHANPTRRYQTLRSMDGAPNLPSGYATMLTLAYFPPLWRKVMDHRVLDHYDGDITRVNIQPSKRAKILA RYGVTEGAA
Sequences:
>Translated_409_residues MTSNLETGPAQPAAQWRDRKRYMWLYGMIPPTAIFIATALVYAMNQLGWQQFSPVLFWIGPLLVYVILPLLDLNFGADGE NAPDEVMEALENDKYYRYCTYIFIPFQYASFFLGAYYFTATDLSWIGFDHGISWISKLGIAASIGVLGGVGINTAHEMGH KKEELERWLSKITLAQTFYGHFYIEHNRGHHVRVATPEDPASSRFGETFWGFWPRSVWGALRSSWNLEATRMKRLNRFVL HPSNDVVNAWLMSVVLFGVTIAIFGTAVIPYLIIQAIYGFTFLETVNYLEHYGLLRQKNGERYERCTPKHSWNSDHLVTN IFLYHLQRHSDHHANPTRRYQTLRSMDGAPNLPSGYATMLTLAYFPPLWRKVMDHRVLDHYDGDITRVNIQPSKRAKILA RYGVTEGAA >Mature_408_residues TSNLETGPAQPAAQWRDRKRYMWLYGMIPPTAIFIATALVYAMNQLGWQQFSPVLFWIGPLLVYVILPLLDLNFGADGEN APDEVMEALENDKYYRYCTYIFIPFQYASFFLGAYYFTATDLSWIGFDHGISWISKLGIAASIGVLGGVGINTAHEMGHK KEELERWLSKITLAQTFYGHFYIEHNRGHHVRVATPEDPASSRFGETFWGFWPRSVWGALRSSWNLEATRMKRLNRFVLH PSNDVVNAWLMSVVLFGVTIAIFGTAVIPYLIIQAIYGFTFLETVNYLEHYGLLRQKNGERYERCTPKHSWNSDHLVTNI FLYHLQRHSDHHANPTRRYQTLRSMDGAPNLPSGYATMLTLAYFPPLWRKVMDHRVLDHYDGDITRVNIQPSKRAKILAR YGVTEGAA
Specific function: Catalyzes the hydroxylation of n-alkanes in the presence of a NADH-rubredoxin reductase and rubredoxin. It preferably hydroxylases long-chain-length alkanes with at least 12 carbon atoms [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fatty acid desaturase family. AlkB subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005804 [H]
Pfam domain/function: PF00487 FA_desaturase [H]
EC number: =1.14.15.3 [H]
Molecular weight: Translated: 47048; Mature: 46917
Theoretical pI: Translated: 8.77; Mature: 8.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSNLETGPAQPAAQWRDRKRYMWLYGMIPPTAIFIATALVYAMNQLGWQQFSPVLFWIG CCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH PLLVYVILPLLDLNFGADGENAPDEVMEALENDKYYRYCTYIFIPFQYASFFLGAYYFTA HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHHHH TDLSWIGFDHGISWISKLGIAASIGVLGGVGINTAHEMGHKKEELERWLSKITLAQTFYG CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHE HFYIEHNRGHHVRVATPEDPASSRFGETFWGFWPRSVWGALRSSWNLEATRMKRLNRFVL EEEEEECCCCEEEEECCCCCCHHHCCHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHEE HPSNDVVNAWLMSVVLFGVTIAIFGTAVIPYLIIQAIYGFTFLETVNYLEHYGLLRQKNG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ERYERCTPKHSWNSDHLVTNIFLYHLQRHSDHHANPTRRYQTLRSMDGAPNLPSGYATML CHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH TLAYFPPLWRKVMDHRVLDHYDGDITRVNIQPSKRAKILARYGVTEGAA HHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCC >Mature Secondary Structure TSNLETGPAQPAAQWRDRKRYMWLYGMIPPTAIFIATALVYAMNQLGWQQFSPVLFWIG CCCCCCCCCCCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH PLLVYVILPLLDLNFGADGENAPDEVMEALENDKYYRYCTYIFIPFQYASFFLGAYYFTA HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHHHH TDLSWIGFDHGISWISKLGIAASIGVLGGVGINTAHEMGHKKEELERWLSKITLAQTFYG CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHE HFYIEHNRGHHVRVATPEDPASSRFGETFWGFWPRSVWGALRSSWNLEATRMKRLNRFVL EEEEEECCCCEEEEECCCCCCHHHCCHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHEE HPSNDVVNAWLMSVVLFGVTIAIFGTAVIPYLIIQAIYGFTFLETVNYLEHYGLLRQKNG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ERYERCTPKHSWNSDHLVTNIFLYHLQRHSDHHANPTRRYQTLRSMDGAPNLPSGYATML CHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH TLAYFPPLWRKVMDHRVLDHYDGDITRVNIQPSKRAKILARYGVTEGAA HHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9546151 [H]