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The map label for this gene is yisV [H]

Identifier: 169630468

GI number: 169630468

Start: 3436069

End: 3437517

Strand: Direct

Name: yisV [H]

Synonym: MAB_3387

Alternate gene names: 169630468

Gene position: 3436069-3437517 (Clockwise)

Preceding gene: 169630466

Following gene: 169630471

Centisome position: 67.81

GC content: 67.01

Gene sequence:

>1449_bases
ATGCCCGATCGAGTGGTCACCGCCGAAACCCTGGCCCGTCACCTAGGCCAGTGGCGCACCGCAGGTTCCGCAGGACCTGC
CTATGGGGCCTTGGCCGACGCGATACGGCTTCTCGTCATCGACGGACGACTGCCCCTGGGCGTCCGGATCCCCAGTGAGC
GAGCACTGGCCAGCGCCCTACATGTCAGCCGCACCACCGTAACCACTGCCTATGCCGAACTACGTGAGAGCGGCTATCTG
CGTGGCCGCCAGGGTGCACGCAGCACCACAGCACTGCCCGGGCCCGATCGAACAGGCTCGGCCACAACGGGATTGATGAG
CCCCATGGTCGACCTACAGAATGCCGCCACGGCCGCACCGGCTGCCGCGGTGCTTGAGGCGTACCAGGCGGCACTGACCA
CGCTGCCCACTCACCTCCGGGGCATCGGTCATGAGCTGGTGGGTATTCCGGAGCTGCGGCCCCGCATCGCTGAACACTTC
TCGCGGCGCGGACTGCCCACCACCGAGGACCAGATCATGGTCACCTGCGGCGCTCAGCAGGCCATCGCGCTACTCCTCGG
GGCATTCGTGGAACCCGGAGACCGTGTGCTGGTGGAGCAGCCGACCTACCACGGCGCCCTGGACGCCATCTCTCAGCGGG
GTGCACGTCCGGTGCCCGTGCCCATGCACACGCATGAGCGCGACTCCGGCTGGGACATGACCGGTATGGAGACCACCATC
CGCCAGACGGCGCCAAACCTGGCGTACTTGGTGCTGGACAACCACAACCCCACCGGCCTAACGATGCCACTGGGGCAGCG
AAAGGCATTGGCCGACATCATTTCCCAGACCAGAACACGCACCGTCGTGGACGAGTCACTCGTAGGCGTTTGGCACCAAA
ACCACACACCCGCGCCAATGGCCGCATTGGTGTCCCGTCCCGAGCTGGTGGTCACTATCGGTTCCATGTCGAAGTCGTTT
TGGGGCGGAATGCGCGTCGGGTGGATTCGTGCCGACCGCACCACCATTGCCCGTCTCGCCGCGGTGCGCTCGGCCATGGA
TACCGGCACACCGATCCTGGAGCAGCTTGCCGCCGCCGAACTGCTGGAACGTGCCGAGGAGGTTGAGGCCGCGCAGCGCG
AAACTCTTCGTGCGCGCCGCGCCCTGGTGGTGAGCGAGCTGCACCGCCGGCTCCCGGAATGGGAACTACAAGAGGCCGAC
GGCGGGCTGTGTATCTGGGCCCGGCTGCCGGCACCGATGAGCACCGCACTTGCCGCCGCAGCCGCGCGCCTCGGGGTCCG
CATTGCCGCCGGACCACGGTTTGGGGTCGGCGGATCGCTGGAGCGCTTTGTGCGGTTGCCGTTCACACAGCACGACGATC
AGTTGTTGCGCGGCGTGGAACTGCTCGCCCAGGCCTGGCACACCGTTACCGGCGCACTCCCCCTTGCCGATTCGACGATG
GTGGGCTGA

Upstream 100 bases:

>100_bases
GTGCCGCGCGCGCTCCAACCAATCCATTTACCGCTCACGGGCCAATATTGTCGGCCAACTGGCTTGTCATTCAATAGCCA
GTTGAGCCACACTGGCTTTT

Downstream 100 bases:

>100_bases
CGTCCGCGCACCGCACCGCACCGCACCGCGAGCATGCCCAAATGTGCCTAAATACCGCATATTTGGGCACATTTGGGCAT
GCTCGCGCCAGGAAAGGTCA

Product: GntR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MPDRVVTAETLARHLGQWRTAGSAGPAYGALADAIRLLVIDGRLPLGVRIPSERALASALHVSRTTVTTAYAELRESGYL
RGRQGARSTTALPGPDRTGSATTGLMSPMVDLQNAATAAPAAAVLEAYQAALTTLPTHLRGIGHELVGIPELRPRIAEHF
SRRGLPTTEDQIMVTCGAQQAIALLLGAFVEPGDRVLVEQPTYHGALDAISQRGARPVPVPMHTHERDSGWDMTGMETTI
RQTAPNLAYLVLDNHNPTGLTMPLGQRKALADIISQTRTRTVVDESLVGVWHQNHTPAPMAALVSRPELVVTIGSMSKSF
WGGMRVGWIRADRTTIARLAAVRSAMDTGTPILEQLAAAELLERAEEVEAAQRETLRARRALVVSELHRRLPEWELQEAD
GGLCIWARLPAPMSTALAAAAARLGVRIAAGPRFGVGGSLERFVRLPFTQHDDQLLRGVELLAQAWHTVTGALPLADSTM
VG

Sequences:

>Translated_482_residues
MPDRVVTAETLARHLGQWRTAGSAGPAYGALADAIRLLVIDGRLPLGVRIPSERALASALHVSRTTVTTAYAELRESGYL
RGRQGARSTTALPGPDRTGSATTGLMSPMVDLQNAATAAPAAAVLEAYQAALTTLPTHLRGIGHELVGIPELRPRIAEHF
SRRGLPTTEDQIMVTCGAQQAIALLLGAFVEPGDRVLVEQPTYHGALDAISQRGARPVPVPMHTHERDSGWDMTGMETTI
RQTAPNLAYLVLDNHNPTGLTMPLGQRKALADIISQTRTRTVVDESLVGVWHQNHTPAPMAALVSRPELVVTIGSMSKSF
WGGMRVGWIRADRTTIARLAAVRSAMDTGTPILEQLAAAELLERAEEVEAAQRETLRARRALVVSELHRRLPEWELQEAD
GGLCIWARLPAPMSTALAAAAARLGVRIAAGPRFGVGGSLERFVRLPFTQHDDQLLRGVELLAQAWHTVTGALPLADSTM
VG
>Mature_481_residues
PDRVVTAETLARHLGQWRTAGSAGPAYGALADAIRLLVIDGRLPLGVRIPSERALASALHVSRTTVTTAYAELRESGYLR
GRQGARSTTALPGPDRTGSATTGLMSPMVDLQNAATAAPAAAVLEAYQAALTTLPTHLRGIGHELVGIPELRPRIAEHFS
RRGLPTTEDQIMVTCGAQQAIALLLGAFVEPGDRVLVEQPTYHGALDAISQRGARPVPVPMHTHERDSGWDMTGMETTIR
QTAPNLAYLVLDNHNPTGLTMPLGQRKALADIISQTRTRTVVDESLVGVWHQNHTPAPMAALVSRPELVVTIGSMSKSFW
GGMRVGWIRADRTTIARLAAVRSAMDTGTPILEQLAAAELLERAEEVEAAQRETLRARRALVVSELHRRLPEWELQEADG
GLCIWARLPAPMSTALAAAAARLGVRIAAGPRFGVGGSLERFVRLPFTQHDDQLLRGVELLAQAWHTVTGALPLADSTMV
G

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787710, Length=448, Percent_Identity=27.2321428571429, Blast_Score=128, Evalue=8e-31,
Organism=Escherichia coli, GI1790797, Length=313, Percent_Identity=24.6006389776358, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788722, Length=333, Percent_Identity=25.2252252252252, Blast_Score=85, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI71994476, Length=239, Percent_Identity=27.1966527196653, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71994472, Length=239, Percent_Identity=27.1966527196653, Blast_Score=72, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51758; Mature: 51627

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDRVVTAETLARHLGQWRTAGSAGPAYGALADAIRLLVIDGRLPLGVRIPSERALASAL
CCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEECCCCCCEEECCCHHHHHHHH
HVSRTTVTTAYAELRESGYLRGRQGARSTTALPGPDRTGSATTGLMSPMVDLQNAATAAP
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AAAVLEAYQAALTTLPTHLRGIGHELVGIPELRPRIAEHFSRRGLPTTEDQIMVTCGAQQ
HHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECHHH
AIALLLGAFVEPGDRVLVEQPTYHGALDAISQRGARPVPVPMHTHERDSGWDMTGMETTI
HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
RQTAPNLAYLVLDNHNPTGLTMPLGQRKALADIISQTRTRTVVDESLVGVWHQNHTPAPM
HHCCCCEEEEEEECCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
AALVSRPELVVTIGSMSKSFWGGMRVGWIRADRTTIARLAAVRSAMDTGTPILEQLAAAE
HHHHCCCCEEEEECCHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LLERAEEVEAAQRETLRARRALVVSELHRRLPEWELQEADGGLCIWARLPAPMSTALAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCHHHHHHHH
AARLGVRIAAGPRFGVGGSLERFVRLPFTQHDDQLLRGVELLAQAWHTVTGALPLADSTM
HHHHCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
VG
CC
>Mature Secondary Structure 
PDRVVTAETLARHLGQWRTAGSAGPAYGALADAIRLLVIDGRLPLGVRIPSERALASAL
CCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEECCCCCCEEECCCHHHHHHHH
HVSRTTVTTAYAELRESGYLRGRQGARSTTALPGPDRTGSATTGLMSPMVDLQNAATAAP
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AAAVLEAYQAALTTLPTHLRGIGHELVGIPELRPRIAEHFSRRGLPTTEDQIMVTCGAQQ
HHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECHHH
AIALLLGAFVEPGDRVLVEQPTYHGALDAISQRGARPVPVPMHTHERDSGWDMTGMETTI
HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
RQTAPNLAYLVLDNHNPTGLTMPLGQRKALADIISQTRTRTVVDESLVGVWHQNHTPAPM
HHCCCCEEEEEEECCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
AALVSRPELVVTIGSMSKSFWGGMRVGWIRADRTTIARLAAVRSAMDTGTPILEQLAAAE
HHHHCCCCEEEEECCHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LLERAEEVEAAQRETLRARRALVVSELHRRLPEWELQEADGGLCIWARLPAPMSTALAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCHHHHHHHH
AARLGVRIAAGPRFGVGGSLERFVRLPFTQHDDQLLRGVELLAQAWHTVTGALPLADSTM
HHHHCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
VG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]