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The map label for this gene is asnC [C]

Identifier: 169630408

GI number: 169630408

Start: 3373205

End: 3373711

Strand: Reverse

Name: asnC [C]

Synonym: MAB_3327c

Alternate gene names: 169630408

Gene position: 3373711-3373205 (Counterclockwise)

Preceding gene: 169630410

Following gene: 169630407

Centisome position: 66.58

GC content: 60.75

Gene sequence:

>507_bases
GTGGCCAACAAGACACGACGACTGTTGCGGGTCGCCGACCCGAGCAACGGCTCCGCGGCATTCCCGCTCGACGAGGTTTC
CAAGGCGATAGTCGAGGAGCTTCAGCAAGATGGGCGGCGCCCCTACGCGACCATCGGCAAGTCGGTAGGGCTCTCCGAGG
CCGCCGTGCGCCAACGTGTGCAACGGATGATCGATGCAGGTGTCATGCAGATCGTCGCCGTCACCGATCCCATGCAGCTC
GGATTCAAGCGTCAGGCGATGATCGGCATCAGATGCTCAGGAGACACCACCGAGGTGGCCGACCGTCTGTCCGAACTGGA
AGCCGTCGATTACGTGGTGCTCACCGCGGGCACTTTCGACGCGATCGTCGAGGTGGTCTGCGAGGACGACGACGACCTGT
TGGACCTGCTCAACAAGCAGATCCGCGCGGTGCCAGGAGTGACCTCCACGGAAACCCTGGTCTATCTGAAATTAGTTAAA
CAGCAATATAATTGGGGTACACGGTGA

Upstream 100 bases:

>100_bases
GGCCTGACATCCACCGATTCCATCGTCAAATCTGCGCTATTCACGCCTATTCATCGATAACCGTTGCGAAATACGACGGA
ATCCGTGCACAATCAAGCTC

Downstream 100 bases:

>100_bases
CATCCGTCGATGTAGTACAAGACCTTTCCGGCGATCTGCACGCGAAGTCCTCGCGGCATCTGTGGGGGCACTTCGCCCGT
CACGGTGCCGGTATCGCGCC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MANKTRRLLRVADPSNGSAAFPLDEVSKAIVEELQQDGRRPYATIGKSVGLSEAAVRQRVQRMIDAGVMQIVAVTDPMQL
GFKRQAMIGIRCSGDTTEVADRLSELEAVDYVVLTAGTFDAIVEVVCEDDDDLLDLLNKQIRAVPGVTSTETLVYLKLVK
QQYNWGTR

Sequences:

>Translated_168_residues
MANKTRRLLRVADPSNGSAAFPLDEVSKAIVEELQQDGRRPYATIGKSVGLSEAAVRQRVQRMIDAGVMQIVAVTDPMQL
GFKRQAMIGIRCSGDTTEVADRLSELEAVDYVVLTAGTFDAIVEVVCEDDDDLLDLLNKQIRAVPGVTSTETLVYLKLVK
QQYNWGTR
>Mature_167_residues
ANKTRRLLRVADPSNGSAAFPLDEVSKAIVEELQQDGRRPYATIGKSVGLSEAAVRQRVQRMIDAGVMQIVAVTDPMQLG
FKRQAMIGIRCSGDTTEVADRLSELEAVDYVVLTAGTFDAIVEVVCEDDDDLLDLLNKQIRAVPGVTSTETLVYLKLVKQ
QYNWGTR

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=140, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR001845
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 18486; Mature: 18355

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANKTRRLLRVADPSNGSAAFPLDEVSKAIVEELQQDGRRPYATIGKSVGLSEAAVRQRV
CCCHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHH
QRMIDAGVMQIVAVTDPMQLGFKRQAMIGIRCSGDTTEVADRLSELEAVDYVVLTAGTFD
HHHHHHHHHHHHHCCCHHHHCCCCHHEEEEEECCCHHHHHHHHHHHHHHCEEEEECCHHH
AIVEVVCEDDDDLLDLLNKQIRAVPGVTSTETLVYLKLVKQQYNWGTR
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ANKTRRLLRVADPSNGSAAFPLDEVSKAIVEELQQDGRRPYATIGKSVGLSEAAVRQRV
CCHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHH
QRMIDAGVMQIVAVTDPMQLGFKRQAMIGIRCSGDTTEVADRLSELEAVDYVVLTAGTFD
HHHHHHHHHHHHHCCCHHHHCCCCHHEEEEEECCCHHHHHHHHHHHHHHCEEEEECCHHH
AIVEVVCEDDDDLLDLLNKQIRAVPGVTSTETLVYLKLVKQQYNWGTR
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]